| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311116
Identifier: 18311116
GI number: 18311116
Start: 2444981
End: 2445835
Strand: Reverse
Name: 18311116
Synonym: CPE2134
Alternate gene names: NA
Gene position: 2445835-2444981 (Counterclockwise)
Preceding gene: 18311117
Following gene: 18311115
Centisome position: 80.68
GC content: 23.27
Gene sequence:
>855_bases GTGAAAATCGACAAAAAGATAATTATACAGCTTGTTACATTTTTTATTTTAGGATTTAAATTTAACTTAGCTTTAGCTTT TTTTTGGATTATAATACATGAATTAGCTCATTATTTTGTTTTATTAAAATTAAATATAGAGTCAGAGAAATTTAAACTTC ATATTCTAGGAGCTAGATTAGAGATAAAAGATTATGAAGATTTAAGTTCAAGAGATAAATTAATAGTATGCTTTGCAGGT CCTATTTTAAATGGAATTGTTGCCATGATTTTTTTCTGCATTTATAAATTAATTTTAAAAAGTGAATATATTTATTCTAC CTATGAAATAAATTTAGTCCTATTTATTTTTAATTTGCTTCCTACCTATCCCTTAGATGGAGGAAAAATATTAGGAGCGA TATTAGAGGAGAAGATGATTTTTAAGGATGTCAATAATATATTGATGAAGATAAGCTATTCATTTGGAATAGCATTTATT TTGTTATCTATATTAGGAATTGTGATTTTAGGTGAAATAAATATAACTAGTATATTAGCAGGAATATTTATAATCTATTT AAGTTATAATGAGAGAAGAAAGGTAATGTATATAATTATGGGTGATATAACGAAAAAGAGGGAACGATTAATTAATAAGA AATACATAGACAGTAGAGTAACTTCTGTATATTGTGAACAAGATATGGTTAATCTTCTTAGAATTATTGATAAAAATAGA TTTAATATATTTTATGTTTTAGATGAAGAAATGAATTTGCTTTATGTCTTAAGAGAAAATGAAATAATAGAGACTTTAAA GACAATTGGGAACATTAATTTAAGAGAATATTACATTAAGTATAGAAAAGAATAA
Upstream 100 bases:
>100_bases CATCTGAGAATGAAAAAGTAAAAGGTGTAATAATTCAGGTATTATTTAAAAATGAGTATGTTAATCCAGAAGAAAGCATG AGGTTTTTAGGAGATAAGCA
Downstream 100 bases:
>100_bases ATATATTGGTTATAATTATTCTTTGTGATAGAATAGAAATTGTTAATATGAGAGAAGTATAAAGAGGTATACTTCTCTTT TTATTATAGATATTAGCTTT
Product: peptidase, M50 family
Products: NA
Alternate protein names: Metalloprotease; Stage IV Sporulation Protein FB; Stage IV Sporulation Protein FB Metalloprotease; Sporulation Protein IVFB Related Protein Metallopeptidase; M50 Family Peptidase; Protease; CBS Domain Containing Protein
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MKIDKKIIIQLVTFFILGFKFNLALAFFWIIIHELAHYFVLLKLNIESEKFKLHILGARLEIKDYEDLSSRDKLIVCFAG PILNGIVAMIFFCIYKLILKSEYIYSTYEINLVLFIFNLLPTYPLDGGKILGAILEEKMIFKDVNNILMKISYSFGIAFI LLSILGIVILGEINITSILAGIFIIYLSYNERRKVMYIIMGDITKKRERLINKKYIDSRVTSVYCEQDMVNLLRIIDKNR FNIFYVLDEEMNLLYVLRENEIIETLKTIGNINLREYYIKYRKE
Sequences:
>Translated_284_residues MKIDKKIIIQLVTFFILGFKFNLALAFFWIIIHELAHYFVLLKLNIESEKFKLHILGARLEIKDYEDLSSRDKLIVCFAG PILNGIVAMIFFCIYKLILKSEYIYSTYEINLVLFIFNLLPTYPLDGGKILGAILEEKMIFKDVNNILMKISYSFGIAFI LLSILGIVILGEINITSILAGIFIIYLSYNERRKVMYIIMGDITKKRERLINKKYIDSRVTSVYCEQDMVNLLRIIDKNR FNIFYVLDEEMNLLYVLRENEIIETLKTIGNINLREYYIKYRKE >Mature_284_residues MKIDKKIIIQLVTFFILGFKFNLALAFFWIIIHELAHYFVLLKLNIESEKFKLHILGARLEIKDYEDLSSRDKLIVCFAG PILNGIVAMIFFCIYKLILKSEYIYSTYEINLVLFIFNLLPTYPLDGGKILGAILEEKMIFKDVNNILMKISYSFGIAFI LLSILGIVILGEINITSILAGIFIIYLSYNERRKVMYIIMGDITKKRERLINKKYIDSRVTSVYCEQDMVNLLRIIDKNR FNIFYVLDEEMNLLYVLRENEIIETLKTIGNINLREYYIKYRKE
Specific function: Unknown
COG id: COG1994
COG function: function code R; Zn-dependent proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33477; Mature: 33477
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIDKKIIIQLVTFFILGFKFNLALAFFWIIIHELAHYFVLLKLNIESEKFKLHILGARL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEEEEEEEE EIKDYEDLSSRDKLIVCFAGPILNGIVAMIFFCIYKLILKSEYIYSTYEINLVLFIFNLL EECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH PTYPLDGGKILGAILEEKMIFKDVNNILMKISYSFGIAFILLSILGIVILGEINITSILA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH GIFIIYLSYNERRKVMYIIMGDITKKRERLINKKYIDSRVTSVYCEQDMVNLLRIIDKNR HHHHEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FNIFYVLDEEMNLLYVLRENEIIETLKTIGNINLREYYIKYRKE EEEEEEEECCCCEEEEEECCHHHHHHHHHCCCCHHHHHHEECCC >Mature Secondary Structure MKIDKKIIIQLVTFFILGFKFNLALAFFWIIIHELAHYFVLLKLNIESEKFKLHILGARL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEEEEEEEE EIKDYEDLSSRDKLIVCFAGPILNGIVAMIFFCIYKLILKSEYIYSTYEINLVLFIFNLL EECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH PTYPLDGGKILGAILEEKMIFKDVNNILMKISYSFGIAFILLSILGIVILGEINITSILA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH GIFIIYLSYNERRKVMYIIMGDITKKRERLINKKYIDSRVTSVYCEQDMVNLLRIIDKNR HHHHEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FNIFYVLDEEMNLLYVLRENEIIETLKTIGNINLREYYIKYRKE EEEEEEEECCCCEEEEEECCHHHHHHHHHCCCCHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA