| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18311114
Identifier: 18311114
GI number: 18311114
Start: 2442311
End: 2443018
Strand: Reverse
Name: 18311114
Synonym: CPE2132
Alternate gene names: NA
Gene position: 2443018-2442311 (Counterclockwise)
Preceding gene: 18311115
Following gene: 18311113
Centisome position: 80.59
GC content: 28.53
Gene sequence:
>708_bases TTGAAGGTGCGATACTTAATTAAATTTACTAAAGATGCAGATATAAAATTTGTTTCTCACTTAGATTTAATGAGAACAAT TCAAAGAATAGTAAGAAGAGCTGAGCTTCCAGTTGAATATTCAAAAGGATTTAACCCTCATATGGCCTTAGCAATAGCAC AACCTTTATCAGTTGGTGTATATTCTGAGGGAGATTATCTAGACTTAAATTTAACTGAAGATATGAATGAAGAGGCAGTA AAAGAAAAGTTAAATGAATTCTCAGCAAATGGTATTAGATTTTTAGAAGTTTCAAAGAGTCCAGTTATACACAATGTTAA GAGATTACCAGCAGCTATGGCTCTTTTAGATGCTGCAAATTATACAATAAAAATAAGATATAATGATATTTCTAAGGCTG AAGAAGAAGTTAATGCTTTAATGGCTCAAAAAGAAATAATAACAATAAAAAGAACTAAAAAAGGCGAAAAAGAAGCTGAT ATAAAACCATTTATAAAAGATTTTAAATGTTGGACTAAGGACAATTATTTAATTGTAAATACAACTATAAGCTGTGGAAG TAGAGAAAATCTTTCAGCAGATCTTTTAGCAAATGTTATAAAAGAAAATACATCAAATGTTAATGAAGAAGCTTTCGTAG AAATAAAAAGAGTTGAGATGTATGCATACAAAGGGAATACATTAGTTCCTCTATATAAATACATCTAA
Upstream 100 bases:
>100_bases AGAGAAAATGAAAAAGCTAAAACTGGTGAACCTACTCAAAACTGTAGAAAAGGATGTACAGGTTGTGGAGTAAATGTAAA CTTTAAAGATGGGGAGTGTT
Downstream 100 bases:
>100_bases ATTAGGAAGTGAATTCATGAGAGATATATACGTAGAAAGAAGAGAAAATTTATTAAGGGTTGCCATAAAGAAAAATAATC TTTTAAGTGAGTGCTATATA
Product: hypothetical protein
Products: NA
Alternate protein names: Fe-S Oxidoreductase; Radical SAM Domain Protein; Elongator /MiaB/NifB; Radical Sam Protein; Radical SAM Family Protein; LOW QUALITY PROTEIN Fe-S Oxidoreductase
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MKVRYLIKFTKDADIKFVSHLDLMRTIQRIVRRAELPVEYSKGFNPHMALAIAQPLSVGVYSEGDYLDLNLTEDMNEEAV KEKLNEFSANGIRFLEVSKSPVIHNVKRLPAAMALLDAANYTIKIRYNDISKAEEEVNALMAQKEIITIKRTKKGEKEAD IKPFIKDFKCWTKDNYLIVNTTISCGSRENLSADLLANVIKENTSNVNEEAFVEIKRVEMYAYKGNTLVPLYKYI
Sequences:
>Translated_235_residues MKVRYLIKFTKDADIKFVSHLDLMRTIQRIVRRAELPVEYSKGFNPHMALAIAQPLSVGVYSEGDYLDLNLTEDMNEEAV KEKLNEFSANGIRFLEVSKSPVIHNVKRLPAAMALLDAANYTIKIRYNDISKAEEEVNALMAQKEIITIKRTKKGEKEAD IKPFIKDFKCWTKDNYLIVNTTISCGSRENLSADLLANVIKENTSNVNEEAFVEIKRVEMYAYKGNTLVPLYKYI >Mature_235_residues MKVRYLIKFTKDADIKFVSHLDLMRTIQRIVRRAELPVEYSKGFNPHMALAIAQPLSVGVYSEGDYLDLNLTEDMNEEAV KEKLNEFSANGIRFLEVSKSPVIHNVKRLPAAMALLDAANYTIKIRYNDISKAEEEVNALMAQKEIITIKRTKKGEKEAD IKPFIKDFKCWTKDNYLIVNTTISCGSRENLSADLLANVIKENTSNVNEEAFVEIKRVEMYAYKGNTLVPLYKYI
Specific function: Unknown
COG id: COG5011
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26906; Mature: 26906
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVRYLIKFTKDADIKFVSHLDLMRTIQRIVRRAELPVEYSKGFNPHMALAIAQPLSVGV CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCEEEE YSEGDYLDLNLTEDMNEEAVKEKLNEFSANGIRFLEVSKSPVIHNVKRLPAAMALLDAAN ECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC YTIKIRYNDISKAEEEVNALMAQKEIITIKRTKKGEKEADIKPFIKDFKCWTKDNYLIVN EEEEEEECCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEE TTISCGSRENLSADLLANVIKENTSNVNEEAFVEIKRVEMYAYKGNTLVPLYKYI EEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEEEEEEEEEECCCEEEEHHHCC >Mature Secondary Structure MKVRYLIKFTKDADIKFVSHLDLMRTIQRIVRRAELPVEYSKGFNPHMALAIAQPLSVGV CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCEEEE YSEGDYLDLNLTEDMNEEAVKEKLNEFSANGIRFLEVSKSPVIHNVKRLPAAMALLDAAN ECCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCC YTIKIRYNDISKAEEEVNALMAQKEIITIKRTKKGEKEADIKPFIKDFKCWTKDNYLIVN EEEEEEECCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEEE TTISCGSRENLSADLLANVIKENTSNVNEEAFVEIKRVEMYAYKGNTLVPLYKYI EEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEEEEEEEEEECCCEEEEHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA