| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is 18311090
Identifier: 18311090
GI number: 18311090
Start: 2418438
End: 2419484
Strand: Reverse
Name: 18311090
Synonym: CPE2108
Alternate gene names: NA
Gene position: 2419484-2418438 (Counterclockwise)
Preceding gene: 18311091
Following gene: 18311089
Centisome position: 79.81
GC content: 25.69
Gene sequence:
>1047_bases ATGTCAAATAAAAATAAAATAATTATAGGATTAGCCTCATTTTTGGTTTTAATTGCCGTAGGTTTTGCTGCTAAATCAAA AATGAATGTGAAAAATAATAGTGTTATGGAGGAAGCTGTTGTTTCTAGTGCCTCTGAGAATAGTGAAGAAGTTAATGAAA AAGATAAAGATATGACTAAAGAAGAAAATTCTAATGATGATACAACTAGCAGTGCATCTAAAAATGATGAAGATGTAAAC GGTGATATTAAAAATAATACAGATAGTAATAAAAAAGATGCCTTAAGTAGTGCATCAAGTAAAGATAATAGTAAATCAAA AATTTCAAGTCAAATAAATTCTAAAGGTATAACTTCAAGTAAAGATAAATCAAATGCAATAAGTAGTGCTTCAATAAAAA CTAATACTTCTAAAAATGGATTTGAAGCTATAAGTCAAAGTCAACCTAGTTCTAGCAAAGTAAATAAAAATAATTTAAGT AAAGATGTAATAAGCAGTGCTTCTGTAAAGTCTAATAATTCTAGCAAAACAGGTGGAGCTATAAATAAAGATCAGCTTAT TTCTAAAAATTCAGATGAAAATAATGTGAAAAAAGATACAGTAAGTAGTGCTTCAGAAAATAATCATGGAACAAATTCAA AAGAAAATAACATAAATAATCAAGTGGTAAGTAAAGTAGAAAATAATAGTGTTAAGGATGCAATAAGTAGTGCCTCTAAA GAAGAAAAACATAATAGTATAAAGGATTTAACTAATAACAATAGTACAAAATCAGGTTCATTTATAGAAAAAGCTATAAA TGAAAAATATACAAAATTAGTTGATTTAGGTTGGGTTAAGTATATAGTAGTTACTTTTAATCAAGGAACTATAAATGATT ATGATTTATATGTTTTAGATAATGGAAATTACAAACCTATAAATCCAAGTAATGTTGATGACAGTGGAAAAATTGTTAAA TGGGAAATAGATAAATTAGGCTACAATACAATAAAAGTTAAAAGTAAGAAAACTGGAGAAGAAGGAACTTATAAGTTTGT AAAGTAA
Upstream 100 bases:
>100_bases TTGAAGTGTAATATAATATTAATGAAAATCATTATCAATTAGGTAAAATTAAATTAGGGGGGAACAAATTAATTTTATAA AAATTTTAAGGGGGATAAAC
Downstream 100 bases:
>100_bases GGGGTGAAGGTAATGAATAAGAAAAAACTAAGTATATTAACAGCTATTATAGCAATATCAGCGTGTTCAATTTCAAAAAC AGCTAGTGCGGCACCAAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 348; Mature: 347
Protein sequence:
>348_residues MSNKNKIIIGLASFLVLIAVGFAAKSKMNVKNNSVMEEAVVSSASENSEEVNEKDKDMTKEENSNDDTTSSASKNDEDVN GDIKNNTDSNKKDALSSASSKDNSKSKISSQINSKGITSSKDKSNAISSASIKTNTSKNGFEAISQSQPSSSKVNKNNLS KDVISSASVKSNNSSKTGGAINKDQLISKNSDENNVKKDTVSSASENNHGTNSKENNINNQVVSKVENNSVKDAISSASK EEKHNSIKDLTNNNSTKSGSFIEKAINEKYTKLVDLGWVKYIVVTFNQGTINDYDLYVLDNGNYKPINPSNVDDSGKIVK WEIDKLGYNTIKVKSKKTGEEGTYKFVK
Sequences:
>Translated_348_residues MSNKNKIIIGLASFLVLIAVGFAAKSKMNVKNNSVMEEAVVSSASENSEEVNEKDKDMTKEENSNDDTTSSASKNDEDVN GDIKNNTDSNKKDALSSASSKDNSKSKISSQINSKGITSSKDKSNAISSASIKTNTSKNGFEAISQSQPSSSKVNKNNLS KDVISSASVKSNNSSKTGGAINKDQLISKNSDENNVKKDTVSSASENNHGTNSKENNINNQVVSKVENNSVKDAISSASK EEKHNSIKDLTNNNSTKSGSFIEKAINEKYTKLVDLGWVKYIVVTFNQGTINDYDLYVLDNGNYKPINPSNVDDSGKIVK WEIDKLGYNTIKVKSKKTGEEGTYKFVK >Mature_347_residues SNKNKIIIGLASFLVLIAVGFAAKSKMNVKNNSVMEEAVVSSASENSEEVNEKDKDMTKEENSNDDTTSSASKNDEDVNG DIKNNTDSNKKDALSSASSKDNSKSKISSQINSKGITSSKDKSNAISSASIKTNTSKNGFEAISQSQPSSSKVNKNNLSK DVISSASVKSNNSSKTGGAINKDQLISKNSDENNVKKDTVSSASENNHGTNSKENNINNQVVSKVENNSVKDAISSASKE EKHNSIKDLTNNNSTKSGSFIEKAINEKYTKLVDLGWVKYIVVTFNQGTINDYDLYVLDNGNYKPINPSNVDDSGKIVKW EIDKLGYNTIKVKSKKTGEEGTYKFVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37662; Mature: 37531
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKNKIIIGLASFLVLIAVGFAAKSKMNVKNNSVMEEAVVSSASENSEEVNEKDKDMTK CCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH EENSNDDTTSSASKNDEDVNGDIKNNTDSNKKDALSSASSKDNSKSKISSQINSKGITSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC KDKSNAISSASIKTNTSKNGFEAISQSQPSSSKVNKNNLSKDVISSASVKSNNSSKTGGA CCHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC INKDQLISKNSDENNVKKDTVSSASENNHGTNSKENNINNQVVSKVENNSVKDAISSASK CCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH EEKHNSIKDLTNNNSTKSGSFIEKAINEKYTKLVDLGWVKYIVVTFNQGTINDYDLYVLD HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEEE NGNYKPINPSNVDDSGKIVKWEIDKLGYNTIKVKSKKTGEEGTYKFVK CCCCCCCCCCCCCCCCCEEEEEHHHCCCEEEEEECCCCCCCCCEECCC >Mature Secondary Structure SNKNKIIIGLASFLVLIAVGFAAKSKMNVKNNSVMEEAVVSSASENSEEVNEKDKDMTK CCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH EENSNDDTTSSASKNDEDVNGDIKNNTDSNKKDALSSASSKDNSKSKISSQINSKGITSS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC KDKSNAISSASIKTNTSKNGFEAISQSQPSSSKVNKNNLSKDVISSASVKSNNSSKTGGA CCHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC INKDQLISKNSDENNVKKDTVSSASENNHGTNSKENNINNQVVSKVENNSVKDAISSASK CCHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH EEKHNSIKDLTNNNSTKSGSFIEKAINEKYTKLVDLGWVKYIVVTFNQGTINDYDLYVLD HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEEEE NGNYKPINPSNVDDSGKIVKWEIDKLGYNTIKVKSKKTGEEGTYKFVK CCCCCCCCCCCCCCCCCEEEEEHHHCCCEEEEEECCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA