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The map label for this gene is patH [H]

Identifier: 18311075

GI number: 18311075

Start: 2400897

End: 2402405

Strand: Reverse

Name: patH [H]

Synonym: CPE2093

Alternate gene names: 18311075

Gene position: 2402405-2400897 (Counterclockwise)

Preceding gene: 18311077

Following gene: 18311074

Centisome position: 79.25

GC content: 29.42

Gene sequence:

>1509_bases
ATGAAGAAAAAATTAATGTTATTATTTCTAACAATAAGTATTTTAATGATGGTATTAGTTGGTTGTAGCAATAATAGTAA
TAACATTCAAAAAAATAGCACTAATAAAGAAAAGATAACAGTAGCAACTTCAGGAACATATTATCCATTTACTTTTCTAG
AGGGTGGAGAACTTAAGGGGTTTGAAGTTGATGTATGGAATGAAATAGGAAAGAGATTAGGGTATGATGTTGAGTTTAAA
ACAGCTTCTTTCAGCGGATTATTTGGAATGCTTGAAAGTGGAAAGGTTAATACAATAGCTAATCAAATAACTGTAACTCC
AGAAAGAGAAGAAAAGTATTATTTCTCAGAGCCATATGTATATAGTGGGGCTCAAATAATAGTTAAAAAAGGCAATGATT
CAATTAAATCCTTTGATGATTTAAAGGGCAAAAAGGTTGGAGTTGACCTTGGAAGTAACTATGAGAAAATAGTTAAAGAT
AAAGATGAAAATAATGAGATAAAAATATTAACTTATCAAAATACAGATGCTGCTTTCAATGAACTTTTACTTGGAAGAAT
AGATGCTGTAGTAATAGATAGGGTTTCAGCTATAGCTGCCATAAAAGAAAAAGATTTAAATTTACAGCTAGCTGGAGAAC
CAATAGATAAAATAGAAAATGCCTATCCTTTTGTTAAGGATGAAAAAGGCAAAGATTTATCAGAAAATGTTAATAAAGCT
TTAGATGAAATGAAGAAAGATGGAACTCTTAAATCTATTTCTGAAAAATGGCTAGGAATGAATGTAAGTGTTCCTAATAA
CCAAGAAAATAGTAATAATATTATAGATAATAATAAAAATAATAGTATAGGTTTTGATTTTATGTATTCATTAGATTTAA
TACCTATGTTATTAAAGGCTATTAACGTAACAATATCTTTATCAGTATTCGGTATGATATTAGGATTAATAGTTGGTATA
GCTCTTGCTATGATAAGGGTTTACAAAATTCCTGTACTAAAGCAAATAGCTGAGGTTTACATATCATTCTTTAGAGGAAC
ACCTCTTTTAGTACAATTATTTTTACTTTATTTTGGTGTGCCACAGGTAATACCTTCACTTCAAAATATGAGTGCATTTA
CTGCGGCATTAATAGGCTTAGGGCTTAATGCATCAGCTTACATAGCAGAAATATTAAGATCATCAATAGATGCTATAGAT
AAAGGACAAATGGAAGCATGTCTATCATTAGGTATGACAATGGCTCAAGCTTTAAAAAGAGTAGTTTTACCACAAGCATT
TAGAATAGCAATACCTCCTTTAGGTAATATATTTGTAGATACAGTAAAAGGATCTTCATTAGCATTTACTTTAGGAGTTG
TAGAATTATTAGCTAAGGCTCAAATGGAAGCGGCAGCTAGTTATAAATTCTTTGAAAGTTATGTGGTAGTTGCAATTATG
TACTGGATAATCATAGGCTTCTTTAATTACCTACAAAAGATTTTAGAGAAAAAACTTTCAGTTTATTAA

Upstream 100 bases:

>100_bases
AAGGCTAAATATAATTAATACGAAATAAAAATCAAAGTTGACAATTTTGATGGGAATTAATATAATTGGAACTATATTAA
AATGGAAAGAGGTTAAGCTA

Downstream 100 bases:

>100_bases
GAGGGGAGGAGAGAAGTCATGATAAAGGTTAAAAATCTTAAAAAGAGCTATAAAAATTTAGAAGTTTTAAAAGATGTTAA
CATGGAAGTTAAACAGGGAG

Product: amino acid ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MKKKLMLLFLTISILMMVLVGCSNNSNNIQKNSTNKEKITVATSGTYYPFTFLEGGELKGFEVDVWNEIGKRLGYDVEFK
TASFSGLFGMLESGKVNTIANQITVTPEREEKYYFSEPYVYSGAQIIVKKGNDSIKSFDDLKGKKVGVDLGSNYEKIVKD
KDENNEIKILTYQNTDAAFNELLLGRIDAVVIDRVSAIAAIKEKDLNLQLAGEPIDKIENAYPFVKDEKGKDLSENVNKA
LDEMKKDGTLKSISEKWLGMNVSVPNNQENSNNIIDNNKNNSIGFDFMYSLDLIPMLLKAINVTISLSVFGMILGLIVGI
ALAMIRVYKIPVLKQIAEVYISFFRGTPLLVQLFLLYFGVPQVIPSLQNMSAFTAALIGLGLNASAYIAEILRSSIDAID
KGQMEACLSLGMTMAQALKRVVLPQAFRIAIPPLGNIFVDTVKGSSLAFTLGVVELLAKAQMEAAASYKFFESYVVVAIM
YWIIIGFFNYLQKILEKKLSVY

Sequences:

>Translated_502_residues
MKKKLMLLFLTISILMMVLVGCSNNSNNIQKNSTNKEKITVATSGTYYPFTFLEGGELKGFEVDVWNEIGKRLGYDVEFK
TASFSGLFGMLESGKVNTIANQITVTPEREEKYYFSEPYVYSGAQIIVKKGNDSIKSFDDLKGKKVGVDLGSNYEKIVKD
KDENNEIKILTYQNTDAAFNELLLGRIDAVVIDRVSAIAAIKEKDLNLQLAGEPIDKIENAYPFVKDEKGKDLSENVNKA
LDEMKKDGTLKSISEKWLGMNVSVPNNQENSNNIIDNNKNNSIGFDFMYSLDLIPMLLKAINVTISLSVFGMILGLIVGI
ALAMIRVYKIPVLKQIAEVYISFFRGTPLLVQLFLLYFGVPQVIPSLQNMSAFTAALIGLGLNASAYIAEILRSSIDAID
KGQMEACLSLGMTMAQALKRVVLPQAFRIAIPPLGNIFVDTVKGSSLAFTLGVVELLAKAQMEAAASYKFFESYVVVAIM
YWIIIGFFNYLQKILEKKLSVY
>Mature_502_residues
MKKKLMLLFLTISILMMVLVGCSNNSNNIQKNSTNKEKITVATSGTYYPFTFLEGGELKGFEVDVWNEIGKRLGYDVEFK
TASFSGLFGMLESGKVNTIANQITVTPEREEKYYFSEPYVYSGAQIIVKKGNDSIKSFDDLKGKKVGVDLGSNYEKIVKD
KDENNEIKILTYQNTDAAFNELLLGRIDAVVIDRVSAIAAIKEKDLNLQLAGEPIDKIENAYPFVKDEKGKDLSENVNKA
LDEMKKDGTLKSISEKWLGMNVSVPNNQENSNNIIDNNKNNSIGFDFMYSLDLIPMLLKAINVTISLSVFGMILGLIVGI
ALAMIRVYKIPVLKQIAEVYISFFRGTPLLVQLFLLYFGVPQVIPSLQNMSAFTAALIGLGLNASAYIAEILRSSIDAID
KGQMEACLSLGMTMAQALKRVVLPQAFRIAIPPLGNIFVDTVKGSSLAFTLGVVELLAKAQMEAAASYKFFESYVVVAIM
YWIIIGFFNYLQKILEKKLSVY

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=215, Percent_Identity=43.7209302325581, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1788228, Length=232, Percent_Identity=40.5172413793103, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787030, Length=217, Percent_Identity=33.6405529953917, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=32.093023255814, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786874, Length=210, Percent_Identity=29.5238095238095, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1787031, Length=229, Percent_Identity=34.4978165938865, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1787085, Length=230, Percent_Identity=32.1739130434783, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788649, Length=270, Percent_Identity=27.037037037037, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1788648, Length=241, Percent_Identity=28.6307053941909, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87082239, Length=202, Percent_Identity=30.6930693069307, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787088, Length=231, Percent_Identity=29.8701298701299, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786873, Length=181, Percent_Identity=29.2817679558011, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788645, Length=191, Percent_Identity=29.3193717277487, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1788646, Length=214, Percent_Identity=25.2336448598131, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=25.1121076233184, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI48994930, Length=127, Percent_Identity=35.4330708661417, Blast_Score=73, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 55707; Mature: 55707

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1 ; PS01039 SBP_BACTERIAL_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLMLLFLTISILMMVLVGCSNNSNNIQKNSTNKEKITVATSGTYYPFTFLEGGELKG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCC
FEVDVWNEIGKRLGYDVEFKTASFSGLFGMLESGKVNTIANQITVTPEREEKYYFSEPYV
EEEHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEECCEEEECCCCCCCEEECCCEE
YSGAQIIVKKGNDSIKSFDDLKGKKVGVDLGSNYEKIVKDKDENNEIKILTYQNTDAAFN
ECCCEEEEECCCCCHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCEEEEEECCCHHHHH
ELLLGRIDAVVIDRVSAIAAIKEKDLNLQLAGEPIDKIENAYPFVKDEKGKDLSENVNKA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHH
LDEMKKDGTLKSISEKWLGMNVSVPNNQENSNNIIDNNKNNSIGFDFMYSLDLIPMLLKA
HHHHHCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
INVTISLSVFGMILGLIVGIALAMIRVYKIPVLKQIAEVYISFFRGTPLLVQLFLLYFGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCH
PQVIPSLQNMSAFTAALIGLGLNASAYIAEILRSSIDAIDKGQMEACLSLGMTMAQALKR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VVLPQAFRIAIPPLGNIFVDTVKGSSLAFTLGVVELLAKAQMEAAASYKFFESYVVVAIM
HHCCCHHEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWIIIGFFNYLQKILEKKLSVY
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKKLMLLFLTISILMMVLVGCSNNSNNIQKNSTNKEKITVATSGTYYPFTFLEGGELKG
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCC
FEVDVWNEIGKRLGYDVEFKTASFSGLFGMLESGKVNTIANQITVTPEREEKYYFSEPYV
EEEHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCEEEECCEEEECCCCCCCEEECCCEE
YSGAQIIVKKGNDSIKSFDDLKGKKVGVDLGSNYEKIVKDKDENNEIKILTYQNTDAAFN
ECCCEEEEECCCCCHHHHHHCCCCEEEEECCCCHHHHHCCCCCCCCEEEEEECCCHHHHH
ELLLGRIDAVVIDRVSAIAAIKEKDLNLQLAGEPIDKIENAYPFVKDEKGKDLSENVNKA
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHH
LDEMKKDGTLKSISEKWLGMNVSVPNNQENSNNIIDNNKNNSIGFDFMYSLDLIPMLLKA
HHHHHCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
INVTISLSVFGMILGLIVGIALAMIRVYKIPVLKQIAEVYISFFRGTPLLVQLFLLYFGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCH
PQVIPSLQNMSAFTAALIGLGLNASAYIAEILRSSIDAIDKGQMEACLSLGMTMAQALKR
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VVLPQAFRIAIPPLGNIFVDTVKGSSLAFTLGVVELLAKAQMEAAASYKFFESYVVVAIM
HHCCCHHEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWIIIGFFNYLQKILEKKLSVY
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA