| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is yqfF [H]
Identifier: 18311001
GI number: 18311001
Start: 2311054
End: 2313108
Strand: Reverse
Name: yqfF [H]
Synonym: CPE2019
Alternate gene names: 18311001
Gene position: 2313108-2311054 (Counterclockwise)
Preceding gene: 18311002
Following gene: 18311000
Centisome position: 76.3
GC content: 29.83
Gene sequence:
>2055_bases ATGGGGAAATTAAAGGAAAAAACATTTGATATATTTAAAGATTACAAAAAAATAATCTTATATATAATAACCTTTATAGT TTTATACTGTACTTTGATGACTGGTATAATAACAAGAAAGTATGATTTAAAGGTAGGAGATATACCTAAGTCAGACATTA AGGCACATAGAGAAATTATTGATGAATCAGCTACTGAAGCAAGAAAAAAAGAAGCTGAAGAAAAGGTTGATAAACAATAT TCTCTAAGGACAGATGTTCAGAAGCAAAGTGAAGAAAAGATAAAGGGTTTCTTTTCTTCAGTTGAAAAAGTTTTAGCTCA AGATAAGCCAGAAGAAGAAAAGGCTAAGCTTATTCCTAGAGCACCATTTAAAATAACAGATGCACAGGCAAATAAAATTG CCTCAATGAATGAGCAAAGTACTAAGAAATTAGAAAGCGTATGCATAGATGGTCTAAATAAGGCATATGAGGCTCCAATT GAAGATGGAAATGAGCAAGACTTAAAGGAAGCTAAAAAAGAATATACAGATTTTATATCTTCAAGTGATTTAAGTGATTC AGAGAAGGCTATTGCATTAAATTTTGTTAATGTAGTAGAACCAAATTTTTTCTATGATAAAGAAAAAACTGATGAATTAA TAAAAGAAACCTTAAAGCAAGTTCCACCAGTTATGATAAAGAAAAATCAAATAGTAGTAAGTGAAGGTGAGCCAGTTACA GCGCACCAATTAGAACTTTTAGGAACTTTAGGCTTATTAAGCGATTCAGCTTCAGCGCTATATATTTATATTGCTCTAGG GGTTTTAGTAATAATAGTTATGTATCTTCAATATGGATACATACATAAATATTATCCAGCTATAAATAAAGAGTTTTCCA AAATAGTTATGATAAGCATATTAAATGTATTTCCAGTAATACTAGCTAGACTTTTTGGTATGATGTCAAATTATATAATA CCACTGGCGTGTATGCCTATGCTTATAACGCTTCTACTAAATTATAAAATATCACTAGTATTTAGTATGTTAAATGTAAT TTTAATAGGAGGGGCAGTAGGATTTAATCCTAATATAATAATCCTTGCTATTTTAAATGTTGTTTTAGGAGGAACATTGC TTAGAAAAATGCAACAGAGAAATGATATATTATATTCTTCAATAACCGTTGCAGTTTTAAGTTCAATATTAACTTTTAGT GTTGGTACTCTAACAACTAATAACTTTATGGAAATACTTGCAGATAGTACATTTGCAGCGGCAGGAGCCATACTTTCTGG GATACTTACAATAGGTGTTTTACCATTTTTTGAGTCAACATTTGATATAGTAACTAATGCTAAATTATTAGAATTATCTA ATCCTAATAATCCATTACTTAAAAAATTACTAATGGAGGCTCCAGGAACATATCATCATAGTATTTTAGTAGCAAACTTA GCAGAGTTAGCTGCTGAGCAAGTAGGAGGAAATCCACTATTAGCTAGGATAGGAGCTTATTATCATGATGTGGGTAAAAC TAAGAGACCATATTTCTTTAGAGAAAATCAGTTTGGAAAGAAAAATCCACATGATAGGTTAAAACCAGAAGTAAGTAGTA AAATAATAATATCTCACGTTAAAGATGGATCAGAATTAGCCAAGGAATATAATTTACCTAAGACTATACATGATTTTATA GTTACCCATCATGGAGAAACTTTAGTTAAATATTTTTATTTAACAGTAAAAAATAACTCTGAAAATCCAGATGAGGTTAA GGAAGAGGATTTTAAATATCCAGGACCAAAACCTATGAGTAAAGAACAAGGAATTGTTATGCTAGCAGATTCAACAGAGG CAGCTGTAAGATCAATTAATGAACCTACTGAAGAGAAAATTGAAAAAATGGTCAATAATATTATTGATGATAAGTTAGCA TCTGGACAGCTAGACAATTGTGATCTTACTCTTAGAGATATAAGTAAGATAAAAAAATGTTTCCTAAAGGCATTAAATGG AATACATCATGAAAGAATAGAATATCCAGATGATAACAAGAAGGAGAAAAAATAA
Upstream 100 bases:
>100_bases GGAAGGGAAGATTAGATTAAAGGTTCTTTTCGTAGTAGAACAAAATATAGCTTTAAGTTACTAGATAAATTAGGACCTAA TGAGGAGAAGATGAGTAATT
Downstream 100 bases:
>100_bases AATGATATTCATAGATAATAGACAGAATAAATTTGATGTTACGGAAGAATTAACTACGAAGTTAGAAGAAGTTATTTCTT TTGTGCTAAAAGAAGAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 684; Mature: 683
Protein sequence:
>684_residues MGKLKEKTFDIFKDYKKIILYIITFIVLYCTLMTGIITRKYDLKVGDIPKSDIKAHREIIDESATEARKKEAEEKVDKQY SLRTDVQKQSEEKIKGFFSSVEKVLAQDKPEEEKAKLIPRAPFKITDAQANKIASMNEQSTKKLESVCIDGLNKAYEAPI EDGNEQDLKEAKKEYTDFISSSDLSDSEKAIALNFVNVVEPNFFYDKEKTDELIKETLKQVPPVMIKKNQIVVSEGEPVT AHQLELLGTLGLLSDSASALYIYIALGVLVIIVMYLQYGYIHKYYPAINKEFSKIVMISILNVFPVILARLFGMMSNYII PLACMPMLITLLLNYKISLVFSMLNVILIGGAVGFNPNIIILAILNVVLGGTLLRKMQQRNDILYSSITVAVLSSILTFS VGTLTTNNFMEILADSTFAAAGAILSGILTIGVLPFFESTFDIVTNAKLLELSNPNNPLLKKLLMEAPGTYHHSILVANL AELAAEQVGGNPLLARIGAYYHDVGKTKRPYFFRENQFGKKNPHDRLKPEVSSKIIISHVKDGSELAKEYNLPKTIHDFI VTHHGETLVKYFYLTVKNNSENPDEVKEEDFKYPGPKPMSKEQGIVMLADSTEAAVRSINEPTEEKIEKMVNNIIDDKLA SGQLDNCDLTLRDISKIKKCFLKALNGIHHERIEYPDDNKKEKK
Sequences:
>Translated_684_residues MGKLKEKTFDIFKDYKKIILYIITFIVLYCTLMTGIITRKYDLKVGDIPKSDIKAHREIIDESATEARKKEAEEKVDKQY SLRTDVQKQSEEKIKGFFSSVEKVLAQDKPEEEKAKLIPRAPFKITDAQANKIASMNEQSTKKLESVCIDGLNKAYEAPI EDGNEQDLKEAKKEYTDFISSSDLSDSEKAIALNFVNVVEPNFFYDKEKTDELIKETLKQVPPVMIKKNQIVVSEGEPVT AHQLELLGTLGLLSDSASALYIYIALGVLVIIVMYLQYGYIHKYYPAINKEFSKIVMISILNVFPVILARLFGMMSNYII PLACMPMLITLLLNYKISLVFSMLNVILIGGAVGFNPNIIILAILNVVLGGTLLRKMQQRNDILYSSITVAVLSSILTFS VGTLTTNNFMEILADSTFAAAGAILSGILTIGVLPFFESTFDIVTNAKLLELSNPNNPLLKKLLMEAPGTYHHSILVANL AELAAEQVGGNPLLARIGAYYHDVGKTKRPYFFRENQFGKKNPHDRLKPEVSSKIIISHVKDGSELAKEYNLPKTIHDFI VTHHGETLVKYFYLTVKNNSENPDEVKEEDFKYPGPKPMSKEQGIVMLADSTEAAVRSINEPTEEKIEKMVNNIIDDKLA SGQLDNCDLTLRDISKIKKCFLKALNGIHHERIEYPDDNKKEKK >Mature_683_residues GKLKEKTFDIFKDYKKIILYIITFIVLYCTLMTGIITRKYDLKVGDIPKSDIKAHREIIDESATEARKKEAEEKVDKQYS LRTDVQKQSEEKIKGFFSSVEKVLAQDKPEEEKAKLIPRAPFKITDAQANKIASMNEQSTKKLESVCIDGLNKAYEAPIE DGNEQDLKEAKKEYTDFISSSDLSDSEKAIALNFVNVVEPNFFYDKEKTDELIKETLKQVPPVMIKKNQIVVSEGEPVTA HQLELLGTLGLLSDSASALYIYIALGVLVIIVMYLQYGYIHKYYPAINKEFSKIVMISILNVFPVILARLFGMMSNYIIP LACMPMLITLLLNYKISLVFSMLNVILIGGAVGFNPNIIILAILNVVLGGTLLRKMQQRNDILYSSITVAVLSSILTFSV GTLTTNNFMEILADSTFAAAGAILSGILTIGVLPFFESTFDIVTNAKLLELSNPNNPLLKKLLMEAPGTYHHSILVANLA ELAAEQVGGNPLLARIGAYYHDVGKTKRPYFFRENQFGKKNPHDRLKPEVSSKIIISHVKDGSELAKEYNLPKTIHDFIV THHGETLVKYFYLTVKNNSENPDEVKEEDFKYPGPKPMSKEQGIVMLADSTEAAVRSINEPTEEKIEKMVNNIIDDKLAS GQLDNCDLTLRDISKIKKCFLKALNGIHHERIEYPDDNKKEKK
Specific function: Unknown
COG id: COG1480
COG function: function code R; Predicted membrane-associated HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011624 - InterPro: IPR011621 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF07698 7TM-7TMR_HD; PF07697 7TMR-HDED [H]
EC number: NA
Molecular weight: Translated: 76889; Mature: 76758
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLKEKTFDIFKDYKKIILYIITFIVLYCTLMTGIITRKYDLKVGDIPKSDIKAHREII CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHH DESATEARKKEAEEKVDKQYSLRTDVQKQSEEKIKGFFSSVEKVLAQDKPEEEKAKLIPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC APFKITDAQANKIASMNEQSTKKLESVCIDGLNKAYEAPIEDGNEQDLKEAKKEYTDFIS CCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC SSDLSDSEKAIALNFVNVVEPNFFYDKEKTDELIKETLKQVPPVMIKKNQIVVSEGEPVT CCCCCCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCH AHQLELLGTLGLLSDSASALYIYIALGVLVIIVMYLQYGYIHKYYPAINKEFSKIVMISI HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNVFPVILARLFGMMSNYIIPLACMPMLITLLLNYKISLVFSMLNVILIGGAVGFNPNII HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH ILAILNVVLGGTLLRKMQQRNDILYSSITVAVLSSILTFSVGTLTTNNFMEILADSTFAA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHH AGAILSGILTIGVLPFFESTFDIVTNAKLLELSNPNNPLLKKLLMEAPGTYHHSILVANL HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH AELAAEQVGGNPLLARIGAYYHDVGKTKRPYFFRENQFGKKNPHDRLKPEVSSKIIISHV HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHCCCCCCCHHHHHHC KDGSELAKEYNLPKTIHDFIVTHHGETLVKYFYLTVKNNSENPDEVKEEDFKYPGPKPMS CCHHHHHHHCCCCHHHHHHHHHCCCHHEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC KEQGIVMLADSTEAAVRSINEPTEEKIEKMVNNIIDDKLASGQLDNCDLTLRDISKIKKC CCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHH FLKALNGIHHERIEYPDDNKKEKK HHHHHCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure GKLKEKTFDIFKDYKKIILYIITFIVLYCTLMTGIITRKYDLKVGDIPKSDIKAHREII CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHH DESATEARKKEAEEKVDKQYSLRTDVQKQSEEKIKGFFSSVEKVLAQDKPEEEKAKLIPR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC APFKITDAQANKIASMNEQSTKKLESVCIDGLNKAYEAPIEDGNEQDLKEAKKEYTDFIS CCCEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC SSDLSDSEKAIALNFVNVVEPNFFYDKEKTDELIKETLKQVPPVMIKKNQIVVSEGEPVT CCCCCCCCCEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCH AHQLELLGTLGLLSDSASALYIYIALGVLVIIVMYLQYGYIHKYYPAINKEFSKIVMISI HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LNVFPVILARLFGMMSNYIIPLACMPMLITLLLNYKISLVFSMLNVILIGGAVGFNPNII HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH ILAILNVVLGGTLLRKMQQRNDILYSSITVAVLSSILTFSVGTLTTNNFMEILADSTFAA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHH AGAILSGILTIGVLPFFESTFDIVTNAKLLELSNPNNPLLKKLLMEAPGTYHHSILVANL HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH AELAAEQVGGNPLLARIGAYYHDVGKTKRPYFFRENQFGKKNPHDRLKPEVSSKIIISHV HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCHHCCCCCCCHHHHHHC KDGSELAKEYNLPKTIHDFIVTHHGETLVKYFYLTVKNNSENPDEVKEEDFKYPGPKPMS CCHHHHHHHCCCCHHHHHHHHHCCCHHEEEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC KEQGIVMLADSTEAAVRSINEPTEEKIEKMVNNIIDDKLASGQLDNCDLTLRDISKIKKC CCCCEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHH FLKALNGIHHERIEYPDDNKKEKK HHHHHCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]