| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310978
Identifier: 18310978
GI number: 18310978
Start: 2287239
End: 2287754
Strand: Direct
Name: 18310978
Synonym: CPE1996
Alternate gene names: NA
Gene position: 2287239-2287754 (Clockwise)
Preceding gene: 18310964
Following gene: 18310979
Centisome position: 75.45
GC content: 26.16
Gene sequence:
>516_bases ATGGATATAGATGATATTAATATACTTATGAAATATCTAAGCAATCTTCCAATGAAAGAATATAAAAAGAATTTTACCTT TTTAGGAGAAGGAATAGCAAGAAAAGTTTTTGCTTTAAATAAAAATTTAGTGGTTAAAGTTGCTAAGGGTGAAGATGGTC TTCATCAAAATTTTGTTGAATCCTATATTTTTAAAAATGCTCCTTATAAACTAAAAAGATATTTATGTCCTGTTCTTCTT TATAATAAAAGGATTTTAATAATGCCTAGAGCAGAAGTCTTCCCTAACATAAGAAGAAAAACTTTTGTTGATTTAAAAAA ATTGCGTGAAGAAAATTCTATAGAAGAAGATATTTATACCCTTGGAGAAAAATATTTTCTATTTAAAGAAGATTTATATG TTCACAGTTCTTGGGGAATTATAAATGATACCTATTATTTAATAGATTATGGTTGCACTTCTTGTGAAGGAGACTTATAT TACGACCTTCTCATGAGAACAAATGGACTTTTATAA
Upstream 100 bases:
>100_bases GTAATTTATGTTTATTATCTAAATAATATATTACTTCAATCAACTTTTATTAAAGTTCCTTCATAGAATATAGAATAAAA AGCTTTGAGGTTTTTTTATT
Downstream 100 bases:
>100_bases AATAATCTTTATTAATTAATTGTTTTATAAATTTTACTGCATTATAATAATGGTAAGAATTTGTAAAGAAAGGACTGATA TTATGAACAAATTTGAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MDIDDINILMKYLSNLPMKEYKKNFTFLGEGIARKVFALNKNLVVKVAKGEDGLHQNFVESYIFKNAPYKLKRYLCPVLL YNKRILIMPRAEVFPNIRRKTFVDLKKLREENSIEEDIYTLGEKYFLFKEDLYVHSSWGIINDTYYLIDYGCTSCEGDLY YDLLMRTNGLL
Sequences:
>Translated_171_residues MDIDDINILMKYLSNLPMKEYKKNFTFLGEGIARKVFALNKNLVVKVAKGEDGLHQNFVESYIFKNAPYKLKRYLCPVLL YNKRILIMPRAEVFPNIRRKTFVDLKKLREENSIEEDIYTLGEKYFLFKEDLYVHSSWGIINDTYYLIDYGCTSCEGDLY YDLLMRTNGLL >Mature_171_residues MDIDDINILMKYLSNLPMKEYKKNFTFLGEGIARKVFALNKNLVVKVAKGEDGLHQNFVESYIFKNAPYKLKRYLCPVLL YNKRILIMPRAEVFPNIRRKTFVDLKKLREENSIEEDIYTLGEKYFLFKEDLYVHSSWGIINDTYYLIDYGCTSCEGDLY YDLLMRTNGLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20244; Mature: 20244
Theoretical pI: Translated: 8.39; Mature: 8.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIDDINILMKYLSNLPMKEYKKNFTFLGEGIARKVFALNKNLVVKVAKGEDGLHQNFVE CCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH SYIFKNAPYKLKRYLCPVLLYNKRILIMPRAEVFPNIRRKTFVDLKKLREENSIEEDIYT HHHHCCCCHHHHHHHHHHHHHCCEEEEEECHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH LGEKYFLFKEDLYVHSSWGIINDTYYLIDYGCTSCEGDLYYDLLMRTNGLL HCCCEEEEECCEEEECCCCEECCEEEEEECCCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MDIDDINILMKYLSNLPMKEYKKNFTFLGEGIARKVFALNKNLVVKVAKGEDGLHQNFVE CCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH SYIFKNAPYKLKRYLCPVLLYNKRILIMPRAEVFPNIRRKTFVDLKKLREENSIEEDIYT HHHHCCCCHHHHHHHHHHHHHCCEEEEEECHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH LGEKYFLFKEDLYVHSSWGIINDTYYLIDYGCTSCEGDLYYDLLMRTNGLL HCCCEEEEECCEEEECCCCEECCEEEEEECCCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA