Click here to switch to the map view.

The map label for this gene is ylmH [H]

Identifier: 18310834

GI number: 18310834

Start: 2122664

End: 2123425

Strand: Reverse

Name: ylmH [H]

Synonym: CPE1852

Alternate gene names: 18310834

Gene position: 2123425-2122664 (Counterclockwise)

Preceding gene: 18310835

Following gene: 18310833

Centisome position: 70.05

GC content: 26.38

Gene sequence:

>762_bases
ATGAATAAAAAAGATTTTATAAATTTATTAAATTTAGAAGAGTTTGAAGCATTAAAACTCTTTGAGAGATTTAATTTAGC
TAGGACAAAAAATATTTCAGTATTTACTGATGAGTTTTATACTCCAGATGTATGGAGCACTCTTCAAGAAATGAATTTAT
TTGATGTAAATGTTGAAAGTTTTGGATTTTTTGAGGATGGAGAAAGAAGAGTAATAGCCTTTAATAAGGACGAATATGAT
TTGTTTCCAATAAGTCTTTTAAGGATTCAATGCAATACTAAATTTTCAAAATTAGAGCACAAGGACTATTTAGGATCTAT
TATGGCCTTAGGCATAAATAGAAATAAAATAGGTGATTTAATTTTAAGAGATGATGGATGCTATGTTGCTGTTCATCATA
GTATAATTGACTTTTTAATTAATAATTTAAATAAAATAAGAAATCTTAATTGTAAATGTGAAATAATTTATGATTTAGAT
GAAATACCTAAACCTAGCTATGAAGAAAAAAATATAATAGTAACTTCTAAAAGGTTAGATTGTATAGTTGCAGCCTTGGG
GAACATATCAAGAAGTAAAGCTTTAGATGCTATAAATTCAGGAAGTGTTCTTCTAGACTATAGAATAACAAAAGATAAAA
GCAAAGAAGTTTCAGAAGATTCAAGACTTACCATAAGAGGTATTGGAAAGTTTAAAATAAGTAATATTTTTGGGACAACG
AAGAGTGGTAGATTAAAATTGACAGTATTTAAGTATACATAG

Upstream 100 bases:

>100_bases
AAAGGAGTATTTATAGTATCACCTTCAAATGTTGAAGTAAGCAATGAATTAAAGAGTGAATTAAGCAACAAAGGAATGTT
CAACTGGGCTTCAAAATAAT

Downstream 100 bases:

>100_bases
GAGTGTGATTATATGAAATTAACCCCAATGGATATTAACAACAAGGAGTTCAAAAGGGTTTTAAGAGGTTATTGTCCAGA
GGAAGTAGATGAATTCTTAG

Product: S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNKKDFINLLNLEEFEALKLFERFNLARTKNISVFTDEFYTPDVWSTLQEMNLFDVNVESFGFFEDGERRVIAFNKDEYD
LFPISLLRIQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDGCYVAVHHSIIDFLINNLNKIRNLNCKCEIIYDLD
EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLDYRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTT
KSGRLKLTVFKYT

Sequences:

>Translated_253_residues
MNKKDFINLLNLEEFEALKLFERFNLARTKNISVFTDEFYTPDVWSTLQEMNLFDVNVESFGFFEDGERRVIAFNKDEYD
LFPISLLRIQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDGCYVAVHHSIIDFLINNLNKIRNLNCKCEIIYDLD
EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLDYRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTT
KSGRLKLTVFKYT
>Mature_253_residues
MNKKDFINLLNLEEFEALKLFERFNLARTKNISVFTDEFYTPDVWSTLQEMNLFDVNVESFGFFEDGERRVIAFNKDEYD
LFPISLLRIQCNTKFSKLEHKDYLGSIMALGINRNKIGDLILRDDGCYVAVHHSIIDFLINNLNKIRNLNCKCEIIYDLD
EIPKPSYEEKNIIVTSKRLDCIVAALGNISRSKALDAINSGSVLLDYRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTT
KSGRLKLTVFKYT

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29181; Mature: 29181

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKDFINLLNLEEFEALKLFERFNLARTKNISVFTDEFYTPDVWSTLQEMNLFDVNVES
CCHHHHEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCEEEECHHH
FGFFEDGERRVIAFNKDEYDLFPISLLRIQCNTKFSKLEHKDYLGSIMALGINRNKIGDL
CCCEECCCEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHCEEEEECCCCCCCCEE
ILRDDGCYVAVHHSIIDFLINNLNKIRNLNCKCEIIYDLDEIPKPSYEEKNIIVTSKRLD
EEECCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCEEEEECCHHH
CIVAALGNISRSKALDAINSGSVLLDYRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTT
HHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEECCC
KSGRLKLTVFKYT
CCCEEEEEEEEEC
>Mature Secondary Structure
MNKKDFINLLNLEEFEALKLFERFNLARTKNISVFTDEFYTPDVWSTLQEMNLFDVNVES
CCHHHHEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCEEEECHHH
FGFFEDGERRVIAFNKDEYDLFPISLLRIQCNTKFSKLEHKDYLGSIMALGINRNKIGDL
CCCEECCCEEEEEECCCCCEEEEEEEEEEEECCCHHHHHHHHHHCEEEEECCCCCCCCEE
ILRDDGCYVAVHHSIIDFLINNLNKIRNLNCKCEIIYDLDEIPKPSYEEKNIIVTSKRLD
EEECCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCCCEEEEECCHHH
CIVAALGNISRSKALDAINSGSVLLDYRITKDKSKEVSEDSRLTIRGIGKFKISNIFGTT
HHHHHHCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEECCC
KSGRLKLTVFKYT
CCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]