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The map label for this gene is ypsC [H]

Identifier: 18310830

GI number: 18310830

Start: 2119280

End: 2120407

Strand: Reverse

Name: ypsC [H]

Synonym: CPE1848

Alternate gene names: 18310830

Gene position: 2120407-2119280 (Counterclockwise)

Preceding gene: 18310831

Following gene: 18310828

Centisome position: 69.95

GC content: 32.54

Gene sequence:

>1128_bases
ATGGATTATAATTTAATAGCCACTGCAACTTTTGGCTTAGAGGCTGTTGTTGCAAAGGAATTAAAAGAGTTAGGATATGA
AGACCTAAAAACTGAAAATGGAAGAGTTCATTTTGAAGGGGATGAAATGGATATTGCCATAACAAACCTTTGGCTTAGAA
CTGCAGATAGAGTTTTAATAAAAGTGGCTGAATTTAAAGCTGAAAGCTTTGAAGAGTTATTTAATAAAACTGTAGAGATT
GATTGGAGTAAGTATATACCTGTAGATGGTAAGATGCATGTTGTTGGTAAATCTGTTAAGTCAAAACTTTTCAGTGTTCC
AGATTGTCAATCAATAGTTAAAAAAGCCGTAGTTAAGAGCATGAGCAGAAGTTACGGTCAAGATTGGTTCACAGAAGATG
GTCCAGTTTATAAAATAGAGGTTGGTCTTTTAAAAGATGTGGTTACCTTAACAATAGATACTTCAGGAGAGGGATTACAC
AAAAGAGGATATAGAGAACACTCAGGGCAAGCTCCCCTTAAGGAAACACTAGCTGCAGCTATGGTTTTACTTTCAAAGTG
GAGAGGAGAGCAAACTCTTATAGACCCATGTTGTGGATCAGGAACAATACTAATAGAAGCTGCTATGATAGCTAAAAACA
TAGCTCCAGGATTACATAGAAAATTCGTTTCTGAAACTTGGCCTTCAATGGATAAGGAAATTTGGGATCAAGTTAGAGAA
GGAGCAGAGAAATCTATAAAGAAAATTCCTTTAGATATAACTGGTTATGATATAGATAGTTGGGTATTAAGTACAGCTAA
AAATAACGTAAGAAAAGCAGGATTAACTGATTGTATAACTATAGAAAAAAGAAACTTTTTTGATTTTTCAACTAAGAAAA
AGTATGGATATATGATTACAAATCCACCATATGGTGAGAGAATAGGTGAAAAAGAAATAGTTTCAAAATTAAATAAACAC
TTTGGAGAAGTTAAAGAGAAATTAGATACTTGGGATTTTAACATTCTAACAGCATGTCCAGATTTTCAAAAAGAGTTTGG
TAGAAAAGCTACTAAAAACAGAAAGCTTTATAATGGTAGACTTTTATGCTACTACTATCAATATTTAGATAATAATTTAA
AGAAGTAA

Upstream 100 bases:

>100_bases
CCTACATCAAAGGATGAAATAATAAAGGTTCAAATCAAAGAGATTGATGGAACTGATTCAGTTGAAATATATGAAAATTA
AAACTAAGGAGTAAATTTTT

Downstream 100 bases:

>100_bases
TTTAAAAAGAATATAATATATAAAAAGTTACAAATAGAATTAAGAGTATCTGTATAAATTATTAGTTCAGTACAGAAGGT
ATTAGAATCTATTTGTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MDYNLIATATFGLEAVVAKELKELGYEDLKTENGRVHFEGDEMDIAITNLWLRTADRVLIKVAEFKAESFEELFNKTVEI
DWSKYIPVDGKMHVVGKSVKSKLFSVPDCQSIVKKAVVKSMSRSYGQDWFTEDGPVYKIEVGLLKDVVTLTIDTSGEGLH
KRGYREHSGQAPLKETLAAAMVLLSKWRGEQTLIDPCCGSGTILIEAAMIAKNIAPGLHRKFVSETWPSMDKEIWDQVRE
GAEKSIKKIPLDITGYDIDSWVLSTAKNNVRKAGLTDCITIEKRNFFDFSTKKKYGYMITNPPYGERIGEKEIVSKLNKH
FGEVKEKLDTWDFNILTACPDFQKEFGRKATKNRKLYNGRLLCYYYQYLDNNLKK

Sequences:

>Translated_375_residues
MDYNLIATATFGLEAVVAKELKELGYEDLKTENGRVHFEGDEMDIAITNLWLRTADRVLIKVAEFKAESFEELFNKTVEI
DWSKYIPVDGKMHVVGKSVKSKLFSVPDCQSIVKKAVVKSMSRSYGQDWFTEDGPVYKIEVGLLKDVVTLTIDTSGEGLH
KRGYREHSGQAPLKETLAAAMVLLSKWRGEQTLIDPCCGSGTILIEAAMIAKNIAPGLHRKFVSETWPSMDKEIWDQVRE
GAEKSIKKIPLDITGYDIDSWVLSTAKNNVRKAGLTDCITIEKRNFFDFSTKKKYGYMITNPPYGERIGEKEIVSKLNKH
FGEVKEKLDTWDFNILTACPDFQKEFGRKATKNRKLYNGRLLCYYYQYLDNNLKK
>Mature_375_residues
MDYNLIATATFGLEAVVAKELKELGYEDLKTENGRVHFEGDEMDIAITNLWLRTADRVLIKVAEFKAESFEELFNKTVEI
DWSKYIPVDGKMHVVGKSVKSKLFSVPDCQSIVKKAVVKSMSRSYGQDWFTEDGPVYKIEVGLLKDVVTLTIDTSGEGLH
KRGYREHSGQAPLKETLAAAMVLLSKWRGEQTLIDPCCGSGTILIEAAMIAKNIAPGLHRKFVSETWPSMDKEIWDQVRE
GAEKSIKKIPLDITGYDIDSWVLSTAKNNVRKAGLTDCITIEKRNFFDFSTKKKYGYMITNPPYGERIGEKEIVSKLNKH
FGEVKEKLDTWDFNILTACPDFQKEFGRKATKNRKLYNGRLLCYYYQYLDNNLKK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=375, Percent_Identity=33.0666666666667, Blast_Score=200, Evalue=1e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42736; Mature: 42736

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYNLIATATFGLEAVVAKELKELGYEDLKTENGRVHFEGDEMDIAITNLWLRTADRVLI
CCCEEEEEEHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHH
KVAEFKAESFEELFNKTVEIDWSKYIPVDGKMHVVGKSVKSKLFSVPDCQSIVKKAVVKS
HHHHHHHHHHHHHHCCEEEECCHHCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH
MSRSYGQDWFTEDGPVYKIEVGLLKDVVTLTIDTSGEGLHKRGYREHSGQAPLKETLAAA
HHHHHCCCCCCCCCCEEEEEHHHHCCEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHH
MVLLSKWRGEQTLIDPCCGSGTILIEAAMIAKNIAPGLHRKFVSETWPSMDKEIWDQVRE
HHHHHHHCCCCCEECCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
GAEKSIKKIPLDITGYDIDSWVLSTAKNNVRKAGLTDCITIEKRNFFDFSTKKKYGYMIT
HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEC
NPPYGERIGEKEIVSKLNKHFGEVKEKLDTWDFNILTACPDFQKEFGRKATKNRKLYNGR
CCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCHHHHCCCEEECCC
LLCYYYQYLDNNLKK
EEEEEHHHHHHCCCC
>Mature Secondary Structure
MDYNLIATATFGLEAVVAKELKELGYEDLKTENGRVHFEGDEMDIAITNLWLRTADRVLI
CCCEEEEEEHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCCEEEEEHHHHHHHHHHHHH
KVAEFKAESFEELFNKTVEIDWSKYIPVDGKMHVVGKSVKSKLFSVPDCQSIVKKAVVKS
HHHHHHHHHHHHHHCCEEEECCHHCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHH
MSRSYGQDWFTEDGPVYKIEVGLLKDVVTLTIDTSGEGLHKRGYREHSGQAPLKETLAAA
HHHHHCCCCCCCCCCEEEEEHHHHCCEEEEEEECCCCCHHHCCCCCCCCCCCHHHHHHHH
MVLLSKWRGEQTLIDPCCGSGTILIEAAMIAKNIAPGLHRKFVSETWPSMDKEIWDQVRE
HHHHHHHCCCCCEECCCCCCCEEEEHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
GAEKSIKKIPLDITGYDIDSWVLSTAKNNVRKAGLTDCITIEKRNFFDFSTKKKYGYMIT
HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEC
NPPYGERIGEKEIVSKLNKHFGEVKEKLDTWDFNILTACPDFQKEFGRKATKNRKLYNGR
CCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCHHHHCCCEEECCC
LLCYYYQYLDNNLKK
EEEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]