| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is spoIIM
Identifier: 18310791
GI number: 18310791
Start: 2089091
End: 2089711
Strand: Reverse
Name: spoIIM
Synonym: CPE1809
Alternate gene names: NA
Gene position: 2089711-2089091 (Counterclockwise)
Preceding gene: 18310792
Following gene: 18310790
Centisome position: 68.93
GC content: 26.73
Gene sequence:
>621_bases ATGAGGATGTTTTTTAGTGGACTTATGGAGTCATTAAAGGAAAATAAAATCACTTTTTTATGGGTACTTTTATTCTTTTT AGTTGGAATAGTTTTAGGATCTTATACTGTTTATTACATGAGTGATTTTAATAGGGTTGAAATTACTACTTATTTTAATA ACTTTTTAGAGTTTTTAGGTGGAAATTCTGTATCTTATACAAGTATTCTTATAGATAGTATAAAGAGTATTCTACCAATG GTTGCAATAATAGTTTTATTAGGTTACACAGCTGTAGGAACACCAATAATTCTTATGATGGATTTAGCTAAAGGTTATGT TATTGGATTTACATTTTCTTTAATAGTTAGCATGTTAGGAAGCAAGGGAATTATGTTAGTCTTATCAGGATTAATGCTTC AAAATTTAATTTTTATTCCAATAATAATGTTAATCAGCGTTTTGGCTATAAGACATTCAGTTACAAAGTTAAAAATGGGA GTATCTAGAGATAGAGTAAAACTTGATGTTAGTAGGGCATATTTAAACTTTCAAGGGCTTTTAAGCTTAATTATAATATC AGGAATACTAATTGAAACATATATATCACCTAATTTAATAAGATTAGTAATTAGTAGGTGA
Upstream 100 bases:
>100_bases TTAATAGAGACTTTAAAATAAATTTAAAAAAGTATGTATCTTTTTATTATGTTAATCATATCTTTTAATAAATAGCTTTA ATGGAGGGGAAAAAGAATTT
Downstream 100 bases:
>100_bases TTTCTGTAATATAAATAATTATGTAATAACATTTTGGTTAGGAGTTAATATGAAAGATTTAGTAAGCAAATACGAAGTAT ATCTAGAATCAATAGGCAAG
Product: stage II sporulation protein M
Products: NA
Alternate protein names: Sporulation Factor SpoIIM Membrane Protein; Sporulation Protein; Sporulation Stage II; Sporulation Stage II Protein M
Number of amino acids: Translated: 206; Mature: 206
Protein sequence:
>206_residues MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLGGNSVSYTSILIDSIKSILPM VAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLGSKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMG VSRDRVKLDVSRAYLNFQGLLSLIIISGILIETYISPNLIRLVISR
Sequences:
>Translated_206_residues MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLGGNSVSYTSILIDSIKSILPM VAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLGSKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMG VSRDRVKLDVSRAYLNFQGLLSLIIISGILIETYISPNLIRLVISR >Mature_206_residues MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLGGNSVSYTSILIDSIKSILPM VAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLGSKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMG VSRDRVKLDVSRAYLNFQGLLSLIIISGILIETYISPNLIRLVISR
Specific function: Unknown
COG id: COG1300
COG function: function code S; Uncharacterized membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23090; Mature: 23090
Theoretical pI: Translated: 9.99; Mature: 9.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLG CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHC GNSVSYTSILIDSIKSILPMVAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC SKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMGVSRDRVKLDVSRAYLNFQGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LSLIIISGILIETYISPNLIRLVISR HHHHHHHHHHHHHHCCCHHHHHEECC >Mature Secondary Structure MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLG CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHC GNSVSYTSILIDSIKSILPMVAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC SKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMGVSRDRVKLDVSRAYLNFQGL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LSLIIISGILIETYISPNLIRLVISR HHHHHHHHHHHHHHCCCHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA