Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is spoIIM

Identifier: 18310791

GI number: 18310791

Start: 2089091

End: 2089711

Strand: Reverse

Name: spoIIM

Synonym: CPE1809

Alternate gene names: NA

Gene position: 2089711-2089091 (Counterclockwise)

Preceding gene: 18310792

Following gene: 18310790

Centisome position: 68.93

GC content: 26.73

Gene sequence:

>621_bases
ATGAGGATGTTTTTTAGTGGACTTATGGAGTCATTAAAGGAAAATAAAATCACTTTTTTATGGGTACTTTTATTCTTTTT
AGTTGGAATAGTTTTAGGATCTTATACTGTTTATTACATGAGTGATTTTAATAGGGTTGAAATTACTACTTATTTTAATA
ACTTTTTAGAGTTTTTAGGTGGAAATTCTGTATCTTATACAAGTATTCTTATAGATAGTATAAAGAGTATTCTACCAATG
GTTGCAATAATAGTTTTATTAGGTTACACAGCTGTAGGAACACCAATAATTCTTATGATGGATTTAGCTAAAGGTTATGT
TATTGGATTTACATTTTCTTTAATAGTTAGCATGTTAGGAAGCAAGGGAATTATGTTAGTCTTATCAGGATTAATGCTTC
AAAATTTAATTTTTATTCCAATAATAATGTTAATCAGCGTTTTGGCTATAAGACATTCAGTTACAAAGTTAAAAATGGGA
GTATCTAGAGATAGAGTAAAACTTGATGTTAGTAGGGCATATTTAAACTTTCAAGGGCTTTTAAGCTTAATTATAATATC
AGGAATACTAATTGAAACATATATATCACCTAATTTAATAAGATTAGTAATTAGTAGGTGA

Upstream 100 bases:

>100_bases
TTAATAGAGACTTTAAAATAAATTTAAAAAAGTATGTATCTTTTTATTATGTTAATCATATCTTTTAATAAATAGCTTTA
ATGGAGGGGAAAAAGAATTT

Downstream 100 bases:

>100_bases
TTTCTGTAATATAAATAATTATGTAATAACATTTTGGTTAGGAGTTAATATGAAAGATTTAGTAAGCAAATACGAAGTAT
ATCTAGAATCAATAGGCAAG

Product: stage II sporulation protein M

Products: NA

Alternate protein names: Sporulation Factor SpoIIM Membrane Protein; Sporulation Protein; Sporulation Stage II; Sporulation Stage II Protein M

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLGGNSVSYTSILIDSIKSILPM
VAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLGSKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMG
VSRDRVKLDVSRAYLNFQGLLSLIIISGILIETYISPNLIRLVISR

Sequences:

>Translated_206_residues
MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLGGNSVSYTSILIDSIKSILPM
VAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLGSKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMG
VSRDRVKLDVSRAYLNFQGLLSLIIISGILIETYISPNLIRLVISR
>Mature_206_residues
MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLGGNSVSYTSILIDSIKSILPM
VAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLGSKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMG
VSRDRVKLDVSRAYLNFQGLLSLIIISGILIETYISPNLIRLVISR

Specific function: Unknown

COG id: COG1300

COG function: function code S; Uncharacterized membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23090; Mature: 23090

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLG
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHC
GNSVSYTSILIDSIKSILPMVAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
SKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMGVSRDRVKLDVSRAYLNFQGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LSLIIISGILIETYISPNLIRLVISR
HHHHHHHHHHHHHHCCCHHHHHEECC
>Mature Secondary Structure
MRMFFSGLMESLKENKITFLWVLLFFLVGIVLGSYTVYYMSDFNRVEITTYFNNFLEFLG
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEHHHHHHHHHHHHC
GNSVSYTSILIDSIKSILPMVAIIVLLGYTAVGTPIILMMDLAKGYVIGFTFSLIVSMLG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
SKGIMLVLSGLMLQNLIFIPIIMLISVLAIRHSVTKLKMGVSRDRVKLDVSRAYLNFQGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
LSLIIISGILIETYISPNLIRLVISR
HHHHHHHHHHHHHHCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA