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The map label for this gene is yrvN [H]

Identifier: 18310769

GI number: 18310769

Start: 2066029

End: 2067255

Strand: Reverse

Name: yrvN [H]

Synonym: CPE1787

Alternate gene names: 18310769

Gene position: 2067255-2066029 (Counterclockwise)

Preceding gene: 18310770

Following gene: 18310768

Centisome position: 68.19

GC content: 30.32

Gene sequence:

>1227_bases
ATGCGTCCTAAAAAATTAGAGGATATAGTTGGACAGAAACACATTGTAGGAGAAGGAACTCCTTTAAACAAGCTTATAAA
AAACAAGAACATAATTAATTGCATTTTTTATGGTCCACCTGGTGTTGGAAAAACTACTTTAGCTAATATAATTTCAAATT
ACACTGATAAGAAATTTTATAAAATAAATGCTACTACATCTTCCATAAAAGAAATACAAAGTATAACTTCTGATATAGAT
AATTTATTAAATTTTAAGGGAATAATACTGTATATAGATGAGCTTCAGCATTTTAATAAAAAACAGCAGCAAGCACTTTT
AGAATTTATTGAAGATGGGAGAGTAATATTAATAGCAAGTACTACAGAAAATCCATACTTTGCTATACATAAGGCTATAC
TAAGCAGAAGTACCATATTTCAATTTAAACCAGTAAGTACTGAAGATATAATAATAGCTTTAGAAAGAGCAGTAAGTAAA
CTTGAAAAAGAAGGATATGTGATTTCTCTTGAAGAAGGCGTTTTAAAGTATATTGGAGATATTTCTCAGGGAGATGTAAG
AAAGGCCTACACAGTATTAGAATTGGCTATTAAATCTCAAGAAAAAGATAATATCCTTTTAAATAAAGAGTATGTAGAAA
AATTAGGGCAATCTAATTTGAAATCTGATTCATCAGGAGATGATTATTATAATTTATTAAGTGCTCTTCAAAAAAGTATA
AGAGGAAGTGACCCTGATGCCTCAATTCATTATTTAGCTAGACTTATTAAGGGTGGAAATATGGATAGCGTAATTAGGAG
GATAGGAGTAATTGCAGCTGAAGACATAGGTCTTGCTCATCCTAATGCTTTGCAAGTAGTAAATAGCGGAATAGACCTTG
CTTTGAAAATAGGAATGCCAGAAGCAAGGATAATATTATCTGAATTAGTAATATATTTAGCTACCTTACCTAAGTCAAAT
AGTGCGTATATGGCTATTGATGAAGCCTTAAGAGATTTAGAAAGGAATAATGCAGGGGATGTGCCAAAACATTTAAAAGA
TGCTCATTATAGTGGGGCAAGCAATTTAGGTGTTGGTGGGTATTTATATCCCCATAATTATCCTAATGGTTATATAAATC
AAGAATATATGCCTGAAAATATGAGAGGAAAAGAATATTATAAGCCTAAGGATAATAAATACGAAAGTAGTATAAAAGCC
TACTGGAATAATGTAAAAAACAAATAG

Upstream 100 bases:

>100_bases
AGCTTTTTAATGAATACAAAATTAAGAGAAGTCTTCAGTTAACATAGTAATCTTATTGAAATTTTGATAATTGAAAAATT
TGAGACCTTTAGCAGATATT

Downstream 100 bases:

>100_bases
TTGAATTTCAATTTTAAATTCCATTTTTTAAGTAAAAAATATGTGAATATTATTGTTGACAAATTTACTCGGTTTTGATA
TTATAATCACATAAAGTGCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MRPKKLEDIVGQKHIVGEGTPLNKLIKNKNIINCIFYGPPGVGKTTLANIISNYTDKKFYKINATTSSIKEIQSITSDID
NLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVILIASTTENPYFAIHKAILSRSTIFQFKPVSTEDIIIALERAVSK
LEKEGYVISLEEGVLKYIGDISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLGQSNLKSDSSGDDYYNLLSALQKSI
RGSDPDASIHYLARLIKGGNMDSVIRRIGVIAAEDIGLAHPNALQVVNSGIDLALKIGMPEARIILSELVIYLATLPKSN
SAYMAIDEALRDLERNNAGDVPKHLKDAHYSGASNLGVGGYLYPHNYPNGYINQEYMPENMRGKEYYKPKDNKYESSIKA
YWNNVKNK

Sequences:

>Translated_408_residues
MRPKKLEDIVGQKHIVGEGTPLNKLIKNKNIINCIFYGPPGVGKTTLANIISNYTDKKFYKINATTSSIKEIQSITSDID
NLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVILIASTTENPYFAIHKAILSRSTIFQFKPVSTEDIIIALERAVSK
LEKEGYVISLEEGVLKYIGDISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLGQSNLKSDSSGDDYYNLLSALQKSI
RGSDPDASIHYLARLIKGGNMDSVIRRIGVIAAEDIGLAHPNALQVVNSGIDLALKIGMPEARIILSELVIYLATLPKSN
SAYMAIDEALRDLERNNAGDVPKHLKDAHYSGASNLGVGGYLYPHNYPNGYINQEYMPENMRGKEYYKPKDNKYESSIKA
YWNNVKNK
>Mature_408_residues
MRPKKLEDIVGQKHIVGEGTPLNKLIKNKNIINCIFYGPPGVGKTTLANIISNYTDKKFYKINATTSSIKEIQSITSDID
NLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVILIASTTENPYFAIHKAILSRSTIFQFKPVSTEDIIIALERAVSK
LEKEGYVISLEEGVLKYIGDISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLGQSNLKSDSSGDDYYNLLSALQKSI
RGSDPDASIHYLARLIKGGNMDSVIRRIGVIAAEDIGLAHPNALQVVNSGIDLALKIGMPEARIILSELVIYLATLPKSN
SAYMAIDEALRDLERNNAGDVPKHLKDAHYSGASNLGVGGYLYPHNYPNGYINQEYMPENMRGKEYYKPKDNKYESSIKA
YWNNVKNK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=433, Percent_Identity=33.7182448036951, Blast_Score=232, Evalue=5e-61,
Organism=Homo sapiens, GI18426904, Length=433, Percent_Identity=31.1778290993072, Blast_Score=195, Evalue=5e-50,
Organism=Escherichia coli, GI1787119, Length=414, Percent_Identity=37.1980676328502, Blast_Score=268, Evalue=4e-73,
Organism=Saccharomyces cerevisiae, GI6324111, Length=419, Percent_Identity=34.8448687350835, Blast_Score=222, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6322528, Length=224, Percent_Identity=28.125, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19921076, Length=258, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 45682; Mature: 45682

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPKKLEDIVGQKHIVGEGTPLNKLIKNKNIINCIFYGPPGVGKTTLANIISNYTDKKFY
CCCHHHHHHHCCCEECCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEE
KINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVILIAS
EEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEE
TTENPYFAIHKAILSRSTIFQFKPVSTEDIIIALERAVSKLEKEGYVISLEEGVLKYIGD
CCCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCC
ISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLGQSNLKSDSSGDDYYNLLSALQKSI
CCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
RGSDPDASIHYLARLIKGGNMDSVIRRIGVIAAEDIGLAHPNALQVVNSGIDLALKIGMP
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCC
EARIILSELVIYLATLPKSNSAYMAIDEALRDLERNNAGDVPKHLKDAHYSGASNLGVGG
HHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
YLYPHNYPNGYINQEYMPENMRGKEYYKPKDNKYESSIKAYWNNVKNK
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRPKKLEDIVGQKHIVGEGTPLNKLIKNKNIINCIFYGPPGVGKTTLANIISNYTDKKFY
CCCHHHHHHHCCCEECCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCEEE
KINATTSSIKEIQSITSDIDNLLNFKGIILYIDELQHFNKKQQQALLEFIEDGRVILIAS
EEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEE
TTENPYFAIHKAILSRSTIFQFKPVSTEDIIIALERAVSKLEKEGYVISLEEGVLKYIGD
CCCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCC
ISQGDVRKAYTVLELAIKSQEKDNILLNKEYVEKLGQSNLKSDSSGDDYYNLLSALQKSI
CCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
RGSDPDASIHYLARLIKGGNMDSVIRRIGVIAAEDIGLAHPNALQVVNSGIDLALKIGMP
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCC
EARIILSELVIYLATLPKSNSAYMAIDEALRDLERNNAGDVPKHLKDAHYSGASNLGVGG
HHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
YLYPHNYPNGYINQEYMPENMRGKEYYKPKDNKYESSIKAYWNNVKNK
EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]