Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18310602

Identifier: 18310602

GI number: 18310602

Start: 1890116

End: 1890586

Strand: Direct

Name: 18310602

Synonym: CPE1620

Alternate gene names: NA

Gene position: 1890116-1890586 (Clockwise)

Preceding gene: 18310598

Following gene: 18310605

Centisome position: 62.35

GC content: 29.3

Gene sequence:

>471_bases
ATGGAAAAAATTACAGATAGAACTCCTAGTGAAGCTTTAAACGATAATCTTAAAGGGCTTTATATGGGAATGGATATTTT
TAAACGTTACGAAAAAAAATGTAAGTCTAATGACTTAAAAAATTTACTAAATGATGTTATAAACCTTTACTCTAAGGAAG
CCTGTGAACTTTCAAGTAAAATATCTGCTCTTGGTGACTCACCAGCTTCAAATGTTGGCATTCTAGGAAAAGCTTCTGAG
GCTATTTACAATATAAAAACTGTTACAGCTGATACAGATAGTGAAATTCTAGAAGAAAGCATAAAAGCTTTTAAGACAGG
TATAATTATGTTTCAAAAGTTTTTACATGAAAAAGAAGATCAATTAGACGAAGAATCAATTGACCTAGTAAAAAATATGA
TACAAGAAAATGAAGAGCTTAGTAAAAAATTAAATGAGTATTCAAGCCCTCATCAAGCTAACTTTTTCTAA

Upstream 100 bases:

>100_bases
TATTTTAAAATATTAATATGAAACTAAGAATTTCTTATTTAAAATAAATTTTTCTAATTATTTTTTTATAAAAGGACAAA
ATAAAGTAGAGGTGATATTC

Downstream 100 bases:

>100_bases
ATAAACTAGGCTATATAAATAGCCTATAAATTAAAGCTTATAAGTTGTTTATTAAACTATTTATAAGTTTTATTTTAAGC
TTTTATATAGCCCACTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MEKITDRTPSEALNDNLKGLYMGMDIFKRYEKKCKSNDLKNLLNDVINLYSKEACELSSKISALGDSPASNVGILGKASE
AIYNIKTVTADTDSEILEESIKAFKTGIIMFQKFLHEKEDQLDEESIDLVKNMIQENEELSKKLNEYSSPHQANFF

Sequences:

>Translated_156_residues
MEKITDRTPSEALNDNLKGLYMGMDIFKRYEKKCKSNDLKNLLNDVINLYSKEACELSSKISALGDSPASNVGILGKASE
AIYNIKTVTADTDSEILEESIKAFKTGIIMFQKFLHEKEDQLDEESIDLVKNMIQENEELSKKLNEYSSPHQANFF
>Mature_156_residues
MEKITDRTPSEALNDNLKGLYMGMDIFKRYEKKCKSNDLKNLLNDVINLYSKEACELSSKISALGDSPASNVGILGKASE
AIYNIKTVTADTDSEILEESIKAFKTGIIMFQKFLHEKEDQLDEESIDLVKNMIQENEELSKKLNEYSSPHQANFF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17680; Mature: 17680

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKITDRTPSEALNDNLKGLYMGMDIFKRYEKKCKSNDLKNLLNDVINLYSKEACELSSK
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISALGDSPASNVGILGKASEAIYNIKTVTADTDSEILEESIKAFKTGIIMFQKFLHEKED
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLDEESIDLVKNMIQENEELSKKLNEYSSPHQANFF
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEKITDRTPSEALNDNLKGLYMGMDIFKRYEKKCKSNDLKNLLNDVINLYSKEACELSSK
CCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISALGDSPASNVGILGKASEAIYNIKTVTADTDSEILEESIKAFKTGIIMFQKFLHEKED
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLDEESIDLVKNMIQENEELSKKLNEYSSPHQANFF
HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA