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The map label for this gene is agaC [H]

Identifier: 18310446

GI number: 18310446

Start: 1721028

End: 1721834

Strand: Reverse

Name: agaC [H]

Synonym: CPE1464

Alternate gene names: 18310446

Gene position: 1721834-1721028 (Counterclockwise)

Preceding gene: 18310447

Following gene: 18310445

Centisome position: 56.8

GC content: 36.18

Gene sequence:

>807_bases
ATGTTGATGCATGCTTTAATGGCAGCACTAAGTGTATTTATCTGTTTTGCTGGTAACTACTTAACAGGACAAAGTATGAT
GGAACGTCCTTTAGTAGTAGGTCTTGTAACTGGTATATTAATGGGAGATATGAAAACAGGTATATTAATGGGGGCAGCTT
TAGAAGCCGTATTCCTAGGAAATGTTAATATAGGTGGGGTTATAGCAGCGGAACCAGTTACTGCAACTACCTTAGCAACA
ACTTTTGCAATTATTTCTCATGTTGAAACAAAGGCGGCAATTACACTAGCTATACCTATTGGTATGTTAGCAGCTTTTGT
TGTTATGTTCTTAAAAAATGTTTTAATGAATGTTTTTGCACCTGCTTTAGACGATGCTGCTAGAGAAAACAATCAAAAGA
AAATAGTAGCACTTCATTACGGTACATGGGCATTATATTATCTTATAATATCAGCTATATCTTTCTTAGGTGTATTACTT
GGAAGTGGTCCTGTAAATGCCTTAGTAGAAAATATACCTGCTAAACTAATGAATGGATTAAGCGCCGCTGGTGGACTTTT
ACCTGCAGTTGGTTTTGCAATGTTAATGAAATTACTTTGGGATAATAAATTAGCAGTATTTTATCTATTAGGATTTATTC
TTACAGCTTACTTAAAACTACCAGCTGTTGCGGTAGCAGTGGTGGGAGTTGTAATATGCGTTGTAACTTCACAAAGGGAT
TTACAGATTTCAAATCTTGTCCTTGCAGGTCCTAAAGGGTCTGGACAGATGACCAAAGAAGATGAAGAGGAGGAATTTTT
TGCGTAA

Upstream 100 bases:

>100_bases
TTTATAAATCGATTTACATTGAATTTTAAAAAAAATAAAGCTTAATAGAGCTTTTAGAAGTAAATATTAAAAAATTAAAT
ATTTTTAGGGGGTAAAAAAT

Downstream 100 bases:

>100_bases
TGAAGATGAAGGAAAACTTATCAATTGAAGATAAAAAAATGTTACGTTCAGTATTTTGGCGTTCTTGGACTATGAATGCT
AGCCGTACTGGTGCTACACA

Product: PTS system protein

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MLMHALMAALSVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGILMGAALEAVFLGNVNIGGVIAAEPVTATTLAT
TFAIISHVETKAAITLAIPIGMLAAFVVMFLKNVLMNVFAPALDDAARENNQKKIVALHYGTWALYYLIISAISFLGVLL
GSGPVNALVENIPAKLMNGLSAAGGLLPAVGFAMLMKLLWDNKLAVFYLLGFILTAYLKLPAVAVAVVGVVICVVTSQRD
LQISNLVLAGPKGSGQMTKEDEEEEFFA

Sequences:

>Translated_268_residues
MLMHALMAALSVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGILMGAALEAVFLGNVNIGGVIAAEPVTATTLAT
TFAIISHVETKAAITLAIPIGMLAAFVVMFLKNVLMNVFAPALDDAARENNQKKIVALHYGTWALYYLIISAISFLGVLL
GSGPVNALVENIPAKLMNGLSAAGGLLPAVGFAMLMKLLWDNKLAVFYLLGFILTAYLKLPAVAVAVVGVVICVVTSQRD
LQISNLVLAGPKGSGQMTKEDEEEEFFA
>Mature_268_residues
MLMHALMAALSVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGILMGAALEAVFLGNVNIGGVIAAEPVTATTLAT
TFAIISHVETKAAITLAIPIGMLAAFVVMFLKNVLMNVFAPALDDAARENNQKKIVALHYGTWALYYLIISAISFLGVLL
GSGPVNALVENIPAKLMNGLSAAGGLLPAVGFAMLMKLLWDNKLAVFYLLGFILTAYLKLPAVAVAVVGVVICVVTSQRD
LQISNLVLAGPKGSGQMTKEDEEEEFFA

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=242, Percent_Identity=29.7520661157025, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788121, Length=255, Percent_Identity=30.1960784313725, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 28253; Mature: 28253

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMHALMAALSVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGILMGAALEAVFLG
CHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NVNIGGVIAAEPVTATTLATTFAIISHVETKAAITLAIPIGMLAAFVVMFLKNVLMNVFA
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHH
PALDDAARENNQKKIVALHYGTWALYYLIISAISFLGVLLGSGPVNALVENIPAKLMNGL
HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SAAGGLLPAVGFAMLMKLLWDNKLAVFYLLGFILTAYLKLPAVAVAVVGVVICVVTSQRD
HHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LQISNLVLAGPKGSGQMTKEDEEEEFFA
CEECCEEEECCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure
MLMHALMAALSVFICFAGNYLTGQSMMERPLVVGLVTGILMGDMKTGILMGAALEAVFLG
CHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NVNIGGVIAAEPVTATTLATTFAIISHVETKAAITLAIPIGMLAAFVVMFLKNVLMNVFA
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHH
PALDDAARENNQKKIVALHYGTWALYYLIISAISFLGVLLGSGPVNALVENIPAKLMNGL
HHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SAAGGLLPAVGFAMLMKLLWDNKLAVFYLLGFILTAYLKLPAVAVAVVGVVICVVTSQRD
HHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LQISNLVLAGPKGSGQMTKEDEEEEFFA
CEECCEEEECCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]