| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310411
Identifier: 18310411
GI number: 18310411
Start: 1684114
End: 1685655
Strand: Direct
Name: 18310411
Synonym: CPE1429
Alternate gene names: NA
Gene position: 1684114-1685655 (Clockwise)
Preceding gene: 18310405
Following gene: 18310412
Centisome position: 55.56
GC content: 24.38
Gene sequence:
>1542_bases TTGGAATTAAAAGTTTTTGAATTTACAAAAGGTACTTTAGAATTACTTAAGGAGATGAAAAAAGATTTAGCCTATAGTGC AAATCTGCTTGATGATTTTTTCTACTCCCTACTAGAGAACTCTTGTGAAGGATTTTTTAATATATCAACTAGAGTAAAAT CAGCTTCTAGTTTAAAAGAGAAAATAATAAGACATAATTATTACATAAAATATGATTCCCCTACGGATTTATTTAGAAAC CTATCTGATTTAATAGGTGTCAGAATAGAATGTAGATTTATAGAAGATGAGGAACATATATTTAAATTTATAAGAACAAT ATTTAATTGCACTAATAAAGATGGATTTTCTTACTCATCACAAAATCCAAATATATTTTTAGACCTTAGAGAACATCAAC CCTTAAAACAAAAAAATGGTTTTGAATTATATAGAATAGATGGTTTTATTCTAAATGAAGAAGAAAAGTTTAATTTTGAA CTTCAAATAAAATCTATGGTAAATAATTTTTGGGGTGAAATTGAACATAAGATAATATATAAAAACTATAATATGATTTT AGGGGATAAATTTTATAAGAATATACTTAATTCTATTAAAAACAATTTATGTTTAATCGATAATCAACTTCTAACTATAT TTAACCATGTTAATTCTCATATGGATAATTCTAATGGGGTTGGATTAAAGAAGGAAGGTATTGAAATTTTACTTTCTAAA ATGATATATGATATATACTCTTCTAAAGTAAAACATGATTTAGGTATATCTGTTGATTTTAGAAATGCCTGTGACATAAT AATAGATTACATATTTACTAAAAATAATTGTAATACTTCTCAAGAATATTATAATACTTTTGTAAATACCTCAGTAAGAT TAAACGAAGTTTTTAAGGATTCCATATCTTTTAAAAACAAATTATCTATAGGTGCTGAGCCCTTATGTTTTGACTCAGAA TTTTCTAATTCAATTGGAAATAAACTAGCCCATGCTATGAATTATGATTTTCATTGGAACTTGTTCTTTAAAATATTATT TCAAATAGAACCTGGTAACAATAGAGAAGATTTTTATTCCTTTATAAGATACTTAGAGACTATTTTTTCTAATAGAGATT CCTATTTAAATCTTTATTTAACTTTTTCAGCTGAAGAGGTATCAATAATAAAAGAAGATATTTTATCTTCTTTAAATAAG GCATTCTTAGAAATTGACTCTATAAAATTTATTTATAGGGATAAACTTTCTGAAATATTTAATCATATAGACGATTATGT TAAATTCCTATGTGAAGGCATAGATTCTTATGAAAATTATGTAAGTCATAAACATCTTTACACAGAGTATCTTTATCTTA CTATATTAAGTTCCTTTAATATGGATTTAGATAAGAGTTCCATATTAGAGTTTGCTAGTGAGCTTAAAAATAGCAAATGT AAACTTAGAATAAGCTATAAGGGAATAAAGCTATTAGCCTCTACCCCTGAAAATTGTAAAGTCAACATAATTGAACTTTT AGAACAAATATATATAAGGTAA
Upstream 100 bases:
>100_bases ATTATTATTTAAAATTCCTCTATTGTTATACTTACTATATGTTGGTATTATTAAAATATACTGACTTTATTTATAAACTA ACAAGGACGGTGTTTTAAAT
Downstream 100 bases:
>100_bases CATTTTTAGTTTATCAGTCTAATATATATTAAAAAAAATTTAGACTGATAAACCTTTCTAAATACAAAGGAGGAATTATT ATGCATTTATTTATAAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 513; Mature: 513
Protein sequence:
>513_residues MELKVFEFTKGTLELLKEMKKDLAYSANLLDDFFYSLLENSCEGFFNISTRVKSASSLKEKIIRHNYYIKYDSPTDLFRN LSDLIGVRIECRFIEDEEHIFKFIRTIFNCTNKDGFSYSSQNPNIFLDLREHQPLKQKNGFELYRIDGFILNEEEKFNFE LQIKSMVNNFWGEIEHKIIYKNYNMILGDKFYKNILNSIKNNLCLIDNQLLTIFNHVNSHMDNSNGVGLKKEGIEILLSK MIYDIYSSKVKHDLGISVDFRNACDIIIDYIFTKNNCNTSQEYYNTFVNTSVRLNEVFKDSISFKNKLSIGAEPLCFDSE FSNSIGNKLAHAMNYDFHWNLFFKILFQIEPGNNREDFYSFIRYLETIFSNRDSYLNLYLTFSAEEVSIIKEDILSSLNK AFLEIDSIKFIYRDKLSEIFNHIDDYVKFLCEGIDSYENYVSHKHLYTEYLYLTILSSFNMDLDKSSILEFASELKNSKC KLRISYKGIKLLASTPENCKVNIIELLEQIYIR
Sequences:
>Translated_513_residues MELKVFEFTKGTLELLKEMKKDLAYSANLLDDFFYSLLENSCEGFFNISTRVKSASSLKEKIIRHNYYIKYDSPTDLFRN LSDLIGVRIECRFIEDEEHIFKFIRTIFNCTNKDGFSYSSQNPNIFLDLREHQPLKQKNGFELYRIDGFILNEEEKFNFE LQIKSMVNNFWGEIEHKIIYKNYNMILGDKFYKNILNSIKNNLCLIDNQLLTIFNHVNSHMDNSNGVGLKKEGIEILLSK MIYDIYSSKVKHDLGISVDFRNACDIIIDYIFTKNNCNTSQEYYNTFVNTSVRLNEVFKDSISFKNKLSIGAEPLCFDSE FSNSIGNKLAHAMNYDFHWNLFFKILFQIEPGNNREDFYSFIRYLETIFSNRDSYLNLYLTFSAEEVSIIKEDILSSLNK AFLEIDSIKFIYRDKLSEIFNHIDDYVKFLCEGIDSYENYVSHKHLYTEYLYLTILSSFNMDLDKSSILEFASELKNSKC KLRISYKGIKLLASTPENCKVNIIELLEQIYIR >Mature_513_residues MELKVFEFTKGTLELLKEMKKDLAYSANLLDDFFYSLLENSCEGFFNISTRVKSASSLKEKIIRHNYYIKYDSPTDLFRN LSDLIGVRIECRFIEDEEHIFKFIRTIFNCTNKDGFSYSSQNPNIFLDLREHQPLKQKNGFELYRIDGFILNEEEKFNFE LQIKSMVNNFWGEIEHKIIYKNYNMILGDKFYKNILNSIKNNLCLIDNQLLTIFNHVNSHMDNSNGVGLKKEGIEILLSK MIYDIYSSKVKHDLGISVDFRNACDIIIDYIFTKNNCNTSQEYYNTFVNTSVRLNEVFKDSISFKNKLSIGAEPLCFDSE FSNSIGNKLAHAMNYDFHWNLFFKILFQIEPGNNREDFYSFIRYLETIFSNRDSYLNLYLTFSAEEVSIIKEDILSSLNK AFLEIDSIKFIYRDKLSEIFNHIDDYVKFLCEGIDSYENYVSHKHLYTEYLYLTILSSFNMDLDKSSILEFASELKNSKC KLRISYKGIKLLASTPENCKVNIIELLEQIYIR
Specific function: Unknown
COG id: COG2357
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60479; Mature: 60479
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELKVFEFTKGTLELLKEMKKDLAYSANLLDDFFYSLLENSCEGFFNISTRVKSASSLKE CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH KIIRHNYYIKYDSPTDLFRNLSDLIGVRIECRFIEDEEHIFKFIRTIFNCTNKDGFSYSS HHHHCCCEEEECCHHHHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC QNPNIFLDLREHQPLKQKNGFELYRIDGFILNEEEKFNFELQIKSMVNNFWGEIEHKIIY CCCCEEEEECCCCCCCCCCCCEEEEECCEEECCCCCCEEEEEHHHHHHHHHHHHCCEEEE KNYNMILGDKFYKNILNSIKNNLCLIDNQLLTIFNHVNSHMDNSNGVGLKKEGIEILLSK ECCCEEECHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH MIYDIYSSKVKHDLGISVDFRNACDIIIDYIFTKNNCNTSQEYYNTFVNTSVRLNEVFKD HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHEECCCCCCHHHHHHHHHCCCHHHHHHHHH SISFKNKLSIGAEPLCFDSEFSNSIGNKLAHAMNYDFHWNLFFKILFQIEPGNNREDFYS HHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEHEEEEEEEEEECCCCCHHHHHH FIRYLETIFSNRDSYLNLYLTFSAEEVSIIKEDILSSLNKAFLEIDSIKFIYRDKLSEIF HHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NHIDDYVKFLCEGIDSYENYVSHKHLYTEYLYLTILSSFNMDLDKSSILEFASELKNSKC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCE KLRISYKGIKLLASTPENCKVNIIELLEQIYIR EEEEEECCEEEEECCCCCCEEHHHHHHHHHHCC >Mature Secondary Structure MELKVFEFTKGTLELLKEMKKDLAYSANLLDDFFYSLLENSCEGFFNISTRVKSASSLKE CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH KIIRHNYYIKYDSPTDLFRNLSDLIGVRIECRFIEDEEHIFKFIRTIFNCTNKDGFSYSS HHHHCCCEEEECCHHHHHHHHHHHHCEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCC QNPNIFLDLREHQPLKQKNGFELYRIDGFILNEEEKFNFELQIKSMVNNFWGEIEHKIIY CCCCEEEEECCCCCCCCCCCCEEEEECCEEECCCCCCEEEEEHHHHHHHHHHHHCCEEEE KNYNMILGDKFYKNILNSIKNNLCLIDNQLLTIFNHVNSHMDNSNGVGLKKEGIEILLSK ECCCEEECHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH MIYDIYSSKVKHDLGISVDFRNACDIIIDYIFTKNNCNTSQEYYNTFVNTSVRLNEVFKD HHHHHHHHHHHHHCCCEEECCHHHHHHHHHHEECCCCCCHHHHHHHHHCCCHHHHHHHHH SISFKNKLSIGAEPLCFDSEFSNSIGNKLAHAMNYDFHWNLFFKILFQIEPGNNREDFYS HHCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCEEHEEEEEEEEEECCCCCHHHHHH FIRYLETIFSNRDSYLNLYLTFSAEEVSIIKEDILSSLNKAFLEIDSIKFIYRDKLSEIF HHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NHIDDYVKFLCEGIDSYENYVSHKHLYTEYLYLTILSSFNMDLDKSSILEFASELKNSKC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCE KLRISYKGIKLLASTPENCKVNIIELLEQIYIR EEEEEECCEEEEECCCCCCEEHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA