| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310366
Identifier: 18310366
GI number: 18310366
Start: 1635159
End: 1636082
Strand: Direct
Name: 18310366
Synonym: CPE1384
Alternate gene names: NA
Gene position: 1635159-1636082 (Clockwise)
Preceding gene: 18310363
Following gene: 18310378
Centisome position: 53.94
GC content: 22.4
Gene sequence:
>924_bases ATGACTTTAAAAAACAAAAATAATTTAATAAAACATCTTAGTTTTATTACTATTATTTTAATTTCCTTTACTTTAATATT TACCTTTAAAGATAATTCTACTAAATCTGTTATTAATGAAAATACTATTAAAGAAACTATAAAGTCAGATTTAAATGGTG ATGGGAAAGAAGATTGTTTATATATAGAATTAGGAAGTGAAAATAATTATATAATAAATGCAACTATTAATGAAAAAAGT TATGAATTAACTCCAAATAAAACAATTAATTCTCTAGGTAACTTTTCGCCTAATCGTCCTATAACTTTAAACTTATTAGA TTTAGACAGAAATAATATTAAAGAGATAATTGTTCAATCTTCTGAAGAAGATAGCTCTATACAGCATTTATTTAAGTGGA CTGGAAATGGCTTTGAAGATATATTTTACTCTACAAACAATATATTAGGAATTGTAGATTCAAATAATGGGAAAACCCCT AAAATACTTTCTTTTTCCTTAGGTGATAGTAAAGAAAATATTCAAAAATATATGCTTTTAAATAAAAAATTTAAAAATAT ATCCTATGATACAGTTGAACCTACTGGACTATATTCTATAATTTCTTTTATAGACATAATATCTTTAAATTATGAAATAT CTGAACTTCCAAATATATTTGCAACTTATATTTCTAAAGAAGATCTATCTCAAATATGGAGATTAGAAAAAGAGTCTTAT TATTATGACTTTCAAGATGCTTTCTTTATGGATATAGCTTGGAATAATACTGGAGAAGCCACTAATTGCTCTTGGACCTT AAACTTTAATAAAATCCCAAAAGAAAACCCTAATAATAAATCACAAGTTAAATTCATAATTCAATTAGAAAAAATTAATG ATACATTTTTAATAAGTTCCATAAATTTAAATATTAATAAATAA
Upstream 100 bases:
>100_bases TTAATCACCACCCTTAGTATATTTTGTTCAAAGTGCAAAAAAAAATTACAATAATAATAAAAAATAGATTATATGCATAT AATCTATTTGAGGTGATTTT
Downstream 100 bases:
>100_bases TAAAAAGAGATTTATCAAAATAACTTATAAATAAAAATTATAAATAAAATTTGATCAAAGTTAAGAATTTCTCATAATAT ATTTATAAATTTCATATACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MTLKNKNNLIKHLSFITIILISFTLIFTFKDNSTKSVINENTIKETIKSDLNGDGKEDCLYIELGSENNYIINATINEKS YELTPNKTINSLGNFSPNRPITLNLLDLDRNNIKEIIVQSSEEDSSIQHLFKWTGNGFEDIFYSTNNILGIVDSNNGKTP KILSFSLGDSKENIQKYMLLNKKFKNISYDTVEPTGLYSIISFIDIISLNYEISELPNIFATYISKEDLSQIWRLEKESY YYDFQDAFFMDIAWNNTGEATNCSWTLNFNKIPKENPNNKSQVKFIIQLEKINDTFLISSINLNINK
Sequences:
>Translated_307_residues MTLKNKNNLIKHLSFITIILISFTLIFTFKDNSTKSVINENTIKETIKSDLNGDGKEDCLYIELGSENNYIINATINEKS YELTPNKTINSLGNFSPNRPITLNLLDLDRNNIKEIIVQSSEEDSSIQHLFKWTGNGFEDIFYSTNNILGIVDSNNGKTP KILSFSLGDSKENIQKYMLLNKKFKNISYDTVEPTGLYSIISFIDIISLNYEISELPNIFATYISKEDLSQIWRLEKESY YYDFQDAFFMDIAWNNTGEATNCSWTLNFNKIPKENPNNKSQVKFIIQLEKINDTFLISSINLNINK >Mature_306_residues TLKNKNNLIKHLSFITIILISFTLIFTFKDNSTKSVINENTIKETIKSDLNGDGKEDCLYIELGSENNYIINATINEKSY ELTPNKTINSLGNFSPNRPITLNLLDLDRNNIKEIIVQSSEEDSSIQHLFKWTGNGFEDIFYSTNNILGIVDSNNGKTPK ILSFSLGDSKENIQKYMLLNKKFKNISYDTVEPTGLYSIISFIDIISLNYEISELPNIFATYISKEDLSQIWRLEKESYY YDFQDAFFMDIAWNNTGEATNCSWTLNFNKIPKENPNNKSQVKFIIQLEKINDTFLISSINLNINK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35328; Mature: 35197
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLKNKNNLIKHLSFITIILISFTLIFTFKDNSTKSVINENTIKETIKSDLNGDGKEDCL CCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE YIELGSENNYIINATINEKSYELTPNKTINSLGNFSPNRPITLNLLDLDRNNIKEIIVQS EEEECCCCCEEEEEEECCCEEEECCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHEEC SEEDSSIQHLFKWTGNGFEDIFYSTNNILGIVDSNNGKTPKILSFSLGDSKENIQKYMLL CCCCHHHHHHHHHCCCCHHHEEEECCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHH NKKFKNISYDTVEPTGLYSIISFIDIISLNYEISELPNIFATYISKEDLSQIWRLEKESY HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCE YYDFQDAFFMDIAWNNTGEATNCSWTLNFNKIPKENPNNKSQVKFIIQLEKINDTFLISS EEECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEE INLNINK EEEEECC >Mature Secondary Structure TLKNKNNLIKHLSFITIILISFTLIFTFKDNSTKSVINENTIKETIKSDLNGDGKEDCL CCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE YIELGSENNYIINATINEKSYELTPNKTINSLGNFSPNRPITLNLLDLDRNNIKEIIVQS EEEECCCCCEEEEEEECCCEEEECCCHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHEEC SEEDSSIQHLFKWTGNGFEDIFYSTNNILGIVDSNNGKTPKILSFSLGDSKENIQKYMLL CCCCHHHHHHHHHCCCCHHHEEEECCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHH NKKFKNISYDTVEPTGLYSIISFIDIISLNYEISELPNIFATYISKEDLSQIWRLEKESY HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHHCCCCE YYDFQDAFFMDIAWNNTGEATNCSWTLNFNKIPKENPNNKSQVKFIIQLEKINDTFLISS EEECCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEE INLNINK EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA