| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is 18310270
Identifier: 18310270
GI number: 18310270
Start: 1520263
End: 1521327
Strand: Reverse
Name: 18310270
Synonym: CPE1288
Alternate gene names: NA
Gene position: 1521327-1520263 (Counterclockwise)
Preceding gene: 18310271
Following gene: 18310269
Centisome position: 50.19
GC content: 21.6
Gene sequence:
>1065_bases ATGGAAATACATGTTATTGAAAATGCTGTTAATTCATTAGAGGTAGGCTTAGATTTTTATAATAAATTTTTAAATAATTT AGATAAAATAGATATTTCAGTATCTCATTTCGGAAATTTAAAATTTGCAGTAGTAGCAGTTCAAAATTCAGTTGAATTAT TATCAAAAGCAATTCTATTAGATGTTAATGAATTGATTGTTTTTAATTTGAATATCGAAGAAGACTCAGTAGTTTGCAAT ATGCTAAGAGAGCAATTTTATAATAAATGCAGAAAAGCACACATTGCATATAATGCAGTATTTTCAAAAAATAATTATAA AACTATAGATTACAGTAAATGTATTCTTTTAATAATGAAAATATTTACTGATAAGATTAGTGCAAAAAATTATAATACAT TAAAGTTATTGGGAGAATATAGAAATACTTTAACACATTTAGGGTATGCTTCAACATTTGAGTGGTATAAAATTTTAATA AATTTAAACGATACTCTAAATTTGATATTGGAATTTTATATAGGTAATATAAATAAATCTGATAGATACTTTTCAAATAA AATTACTGATTCAATAAGATATACATTGGAAAAAAGTAACAAAGAATTACTAGATTTATGGATGGCTAGCAAAGAAATAT TATTAGAGAATATTAATGAAAAGTTGGACAGTTATTTTGATAATAGTATTTCTGTTGAAGATGTTAAACAGGATAATGAA TATGGCTTTTATGAAAGCATAACTTTTAAGTATAATGAAGAGAGTAATTTAAAATGGATATTTAAATATTCTTATCTAAA TGAAGCTATTATAATAATTGATGAGAATAACAAGATTGTTTCTTTTATAAGTTTAGATGATGAAAACTTAAAGTATAAAA AGGATGCTGATAATATTCCTATTGAATTAGAAAAATTTGATTTATATGTTCCTATAAAATTATTAGAGTATGAAGAAAAT AAATTATATGATATTAAATCTAGAAGTTCAACATTAAAAATAAAATGTGAAGATAATAGTAATGCAAGAACATTAATTAA TATGTATTTGAAAAATTGTAAGTAG
Upstream 100 bases:
>100_bases TTAATAATTCAAGAATAAAGTAAAATTGTTAATTTTTAATAAATATAATATACTTATATGGTAAAATAATTATTATATAA ATAAACTAAGGAGAGATATT
Downstream 100 bases:
>100_bases AATAAAATTATATTTTAGTGGATTTTAAAGATCATCTTCCGTCTCAATCAAATTAGTAATTATACAATAAAATAAAAAAA TAGAGAAAATGTAAAAGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 354; Mature: 354
Protein sequence:
>354_residues MEIHVIENAVNSLEVGLDFYNKFLNNLDKIDISVSHFGNLKFAVVAVQNSVELLSKAILLDVNELIVFNLNIEEDSVVCN MLREQFYNKCRKAHIAYNAVFSKNNYKTIDYSKCILLIMKIFTDKISAKNYNTLKLLGEYRNTLTHLGYASTFEWYKILI NLNDTLNLILEFYIGNINKSDRYFSNKITDSIRYTLEKSNKELLDLWMASKEILLENINEKLDSYFDNSISVEDVKQDNE YGFYESITFKYNEESNLKWIFKYSYLNEAIIIIDENNKIVSFISLDDENLKYKKDADNIPIELEKFDLYVPIKLLEYEEN KLYDIKSRSSTLKIKCEDNSNARTLINMYLKNCK
Sequences:
>Translated_354_residues MEIHVIENAVNSLEVGLDFYNKFLNNLDKIDISVSHFGNLKFAVVAVQNSVELLSKAILLDVNELIVFNLNIEEDSVVCN MLREQFYNKCRKAHIAYNAVFSKNNYKTIDYSKCILLIMKIFTDKISAKNYNTLKLLGEYRNTLTHLGYASTFEWYKILI NLNDTLNLILEFYIGNINKSDRYFSNKITDSIRYTLEKSNKELLDLWMASKEILLENINEKLDSYFDNSISVEDVKQDNE YGFYESITFKYNEESNLKWIFKYSYLNEAIIIIDENNKIVSFISLDDENLKYKKDADNIPIELEKFDLYVPIKLLEYEEN KLYDIKSRSSTLKIKCEDNSNARTLINMYLKNCK >Mature_354_residues MEIHVIENAVNSLEVGLDFYNKFLNNLDKIDISVSHFGNLKFAVVAVQNSVELLSKAILLDVNELIVFNLNIEEDSVVCN MLREQFYNKCRKAHIAYNAVFSKNNYKTIDYSKCILLIMKIFTDKISAKNYNTLKLLGEYRNTLTHLGYASTFEWYKILI NLNDTLNLILEFYIGNINKSDRYFSNKITDSIRYTLEKSNKELLDLWMASKEILLENINEKLDSYFDNSISVEDVKQDNE YGFYESITFKYNEESNLKWIFKYSYLNEAIIIIDENNKIVSFISLDDENLKYKKDADNIPIELEKFDLYVPIKLLEYEEN KLYDIKSRSSTLKIKCEDNSNARTLINMYLKNCK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41606; Mature: 41606
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEIHVIENAVNSLEVGLDFYNKFLNNLDKIDISVSHFGNLKFAVVAVQNSVELLSKAILL CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHE DVNELIVFNLNIEEDSVVCNMLREQFYNKCRKAHIAYNAVFSKNNYKTIDYSKCILLIMK EECEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEECHHHHHHHHHH IFTDKISAKNYNTLKLLGEYRNTLTHLGYASTFEWYKILINLNDTLNLILEFYIGNINKS HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCC DRYFSNKITDSIRYTLEKSNKELLDLWMASKEILLENINEKLDSYFDNSISVEDVKQDNE CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC YGFYESITFKYNEESNLKWIFKYSYLNEAIIIIDENNKIVSFISLDDENLKYKKDADNIP CCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCCCCC IELEKFDLYVPIKLLEYEENKLYDIKSRSSTLKIKCEDNSNARTLINMYLKNCK EEEEEEEEEEEEEEEEECCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCC >Mature Secondary Structure MEIHVIENAVNSLEVGLDFYNKFLNNLDKIDISVSHFGNLKFAVVAVQNSVELLSKAILL CEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEECCHHHHHHHHHHE DVNELIVFNLNIEEDSVVCNMLREQFYNKCRKAHIAYNAVFSKNNYKTIDYSKCILLIMK EECEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEECHHHHHHHHHH IFTDKISAKNYNTLKLLGEYRNTLTHLGYASTFEWYKILINLNDTLNLILEFYIGNINKS HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCC DRYFSNKITDSIRYTLEKSNKELLDLWMASKEILLENINEKLDSYFDNSISVEDVKQDNE CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC YGFYESITFKYNEESNLKWIFKYSYLNEAIIIIDENNKIVSFISLDDENLKYKKDADNIP CCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEECCCCCCCC IELEKFDLYVPIKLLEYEENKLYDIKSRSSTLKIKCEDNSNARTLINMYLKNCK EEEEEEEEEEEEEEEEECCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA