Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is bcn [H]

Identifier: 18310120

GI number: 18310120

Start: 1332512

End: 1333426

Strand: Direct

Name: bcn [H]

Synonym: CPE1138

Alternate gene names: 18310120

Gene position: 1332512-1333426 (Clockwise)

Preceding gene: 18310119

Following gene: 18310122

Centisome position: 43.96

GC content: 29.95

Gene sequence:

>915_bases
ATGGATATTAAGAAAGTATATTTAAAAGGTCAAGAAGAAGCTAAAGGATGGAATAAACCAAACAAAATTATAATACACCA
TCCAGAATATAACGGATCTATAGAAGGACTAAACGATATTATGAGAAGCATGGGATTTTATATGATAGGATATAATTTCT
ATGTACGTAAAGATGGTACAGTATATGAAGGTAGACCAGTATGGGCAACAGGAGCTAACTGTTATGGTCACAATCATGAT
AGTATAGGTGTATGTTTTGAAGGCAATTATGATAAAGAAACTGATATGCCACAAGAACAATTTAATGCTGGTGTAGAACT
TATAAAATATCTAAAAAGTAAATATGGTATTAATGAAGTTAATGGACATAAACACTATTACAATACAGCTTGTCCAGGAC
AATATTTCCCACTAGAAAAAATGTTAAGTTGCTTAGATGGACAATTACAACAAGAAGTTATTTCTAACACACCTCAAGTT
ACTAATAACAATATAGATATTAAAGCTAATGCTAAAGTCATTAATGATTTTTTATATGCTAGAGATATTAATGGTAATAA
AGTTGGTGGATATGTTAGTATAGGAGATAATATAGAGGTATTAGATGTTAGCTATAGTAAACAACTAGATAGAATCAAAT
ATCCAACAAGTAATGGAGCTAAAGAAAGATATGTTACAAATGCAACTAACTGTATAGAATATTTTTACCAAGATCAATGG
CAAAATGGAAGCACTCCAGAACCAGTATACCAAGATAGTTCTTGTAGTCAAAAAATAGGAACGTTAAACCCTTATGAAAA
AGCTACTCCTATATACAGAAAAGACGGTGTCCTTCACATAGTTTATTCTACAGATAAGGGTAGAAATACAAAATCTGGGT
ATGTAAGATATAATGGTGAATTTAGTATTTTTTAA

Upstream 100 bases:

>100_bases
GCTTTTTATTTTGGACAAAGTTTAGCAAGTAGAAGTAATAATAAGCAAGGGTTAGGAGAATAATCTCTTAGCCTTTTTGT
TTTATAAGGAGGTAATTAAT

Downstream 100 bases:

>100_bases
ATGTTTATAATACATATTATATGTTAATAATTAGAATGATGAAATATTATCTGGAGGGATTAATTATGGAGTTATTCTAT
GGCTTATTAAGTTTTGCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHD
SIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQV
TNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW
QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF

Sequences:

>Translated_304_residues
MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHD
SIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQV
TNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW
QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF
>Mature_304_residues
MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGTVYEGRPVWATGANCYGHNHD
SIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEVNGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQV
TNNNIDIKANAKVINDFLYARDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW
QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGEFSIF

Specific function: May function as an ionophore [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000834
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF00246 Peptidase_M14; PF08239 SH3_3 [H]

EC number: NA

Molecular weight: Translated: 34659; Mature: 34659

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGT
CCCCEEEECCCHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEEEEECCCE
VYEGRPVWATGANCYGHNHDSIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEV
EECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
NGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQVTNNNIDIKANAKVINDFLYA
CCCCCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHE
RDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW
ECCCCCCCCEEEEECCCEEEEEECHHHHHHHEECCCCCCCCHHEECCHHHHHHHHHHHHC
QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGE
CCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCEECCCEEEEEEECCCCCCCCCCEEEECCE
FSIF
EECC
>Mature Secondary Structure
MDIKKVYLKGQEEAKGWNKPNKIIIHHPEYNGSIEGLNDIMRSMGFYMIGYNFYVRKDGT
CCCCEEEECCCHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCEEEEEEEEEEECCCE
VYEGRPVWATGANCYGHNHDSIGVCFEGNYDKETDMPQEQFNAGVELIKYLKSKYGINEV
EECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
NGHKHYYNTACPGQYFPLEKMLSCLDGQLQQEVISNTPQVTNNNIDIKANAKVINDFLYA
CCCCCEECCCCCCCCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHE
RDINGNKVGGYVSIGDNIEVLDVSYSKQLDRIKYPTSNGAKERYVTNATNCIEYFYQDQW
ECCCCCCCCEEEEECCCEEEEEECHHHHHHHEECCCCCCCCHHEECCHHHHHHHHHHHHC
QNGSTPEPVYQDSSCSQKIGTLNPYEKATPIYRKDGVLHIVYSTDKGRNTKSGYVRYNGE
CCCCCCCCCCCCCCHHHHCCCCCCHHHCCCCEECCCEEEEEEECCCCCCCCCCEEEECCE
FSIF
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2901768; 2877971; 2460717 [H]