| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
Click here to switch to the map view.
The map label for this gene is pac
Identifier: 18310074
GI number: 18310074
Start: 1293432
End: 1294415
Strand: Direct
Name: pac
Synonym: CPE1092
Alternate gene names: NA
Gene position: 1293432-1294415 (Clockwise)
Preceding gene: 18310071
Following gene: 18310075
Centisome position: 42.67
GC content: 29.88
Gene sequence:
>984_bases GTGTGTACTCATATACATATTTCAAGTGTTAAGAATAATCTTTATTGGGGAAGAACTTTAGATACATCATTTAATCCATT TGATGTTGATTCTAAAGTAACAATTGTTCCTAGAAATTTTACTTTAAAAACTCAAAGTAAACCATGGAAAACTAAATATG CCTTTTTAGGTATAAATTTATGTGGATCTACTCTGTTTTTTGATGGAGTTAATGAAAAGGGGCTTGCTGGAGGTCTTTTA TTTTTAAAGGCATGTACATGGGATAAGAAAGAAAATATAGAAAAGCAAGGACTTATAGCCATTAATAGTGGAGAAATAGT TACTTGGATTTTAAGCAATTTTGAAAGTGTTAGTGATATAAAAAATAACATATCAAAAGTTGTAGTAACATCTGATGACA TACCATCATTAGGAGAGCTTGGAAAAGGAAATCCTATTACTGCACATTATACTTTCACAGATAAAATGGGAGAATCAGTT GTATTAGAACCAACAAACCATGGACATTTTCGTGTTTTTGATAATACTGTAGGGGTAATGGCTAATGATCCAACATTTGA TTGGCACATGACTAATTTGGCAAATTATATTCAAGTTCAAGGATTTAATAAGCAACAAAATAATTTAAATAGTAAAACAG TTATTACACCAATTTCAAATGGTACAGGTATGCTTGGATTACCTGGAGATTATACTTCACCATCAAGGTTTGTACGTGTA GCATATTTAAGAAATCTTATAGGAGACATTACTGACGAAGAAGCTCCAGCACGTTTATTTAGTATTTTAAATTCTGTTTG GGTTCCAAAGGATGTTGAACGTTTTTATGAAGATAAAAAAGACTCAGATTTTTCAAGTTATATGTGTGCATATGACCAAA ACTTAGGTAAGTTATATTTACGTGTTTTCAATCATATAGATACAATGGAATTCTCTTTAGAAAATGTTAAAGAAGATGAA TTAGTAACTTATTCAGTTCAATAA
Upstream 100 bases:
>100_bases TTAGTATACATATTATGCATTAAGCCTAAATTGACAATAAATATGTGTAGGTATACTCTAAAAATATAATTTAAAATTGT TTTTTTAGGAGATGATTTAG
Downstream 100 bases:
>100_bases ATAATTTTTACATAGCAATAAAAAGTCTTAGAAATAAGACTTTTTTTATTTTAAATTCAGTTTATTGTTAGAAGTAATTT AATCTTTTTGATTTATATAA
Product: choloylglycine hydrolase family protein
Products: NA
Alternate protein names: Penicillin V amidase; PVA [H]
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MCTHIHISSVKNNLYWGRTLDTSFNPFDVDSKVTIVPRNFTLKTQSKPWKTKYAFLGINLCGSTLFFDGVNEKGLAGGLL FLKACTWDKKENIEKQGLIAINSGEIVTWILSNFESVSDIKNNISKVVVTSDDIPSLGELGKGNPITAHYTFTDKMGESV VLEPTNHGHFRVFDNTVGVMANDPTFDWHMTNLANYIQVQGFNKQQNNLNSKTVITPISNGTGMLGLPGDYTSPSRFVRV AYLRNLIGDITDEEAPARLFSILNSVWVPKDVERFYEDKKDSDFSSYMCAYDQNLGKLYLRVFNHIDTMEFSLENVKEDE LVTYSVQ
Sequences:
>Translated_327_residues MCTHIHISSVKNNLYWGRTLDTSFNPFDVDSKVTIVPRNFTLKTQSKPWKTKYAFLGINLCGSTLFFDGVNEKGLAGGLL FLKACTWDKKENIEKQGLIAINSGEIVTWILSNFESVSDIKNNISKVVVTSDDIPSLGELGKGNPITAHYTFTDKMGESV VLEPTNHGHFRVFDNTVGVMANDPTFDWHMTNLANYIQVQGFNKQQNNLNSKTVITPISNGTGMLGLPGDYTSPSRFVRV AYLRNLIGDITDEEAPARLFSILNSVWVPKDVERFYEDKKDSDFSSYMCAYDQNLGKLYLRVFNHIDTMEFSLENVKEDE LVTYSVQ >Mature_327_residues MCTHIHISSVKNNLYWGRTLDTSFNPFDVDSKVTIVPRNFTLKTQSKPWKTKYAFLGINLCGSTLFFDGVNEKGLAGGLL FLKACTWDKKENIEKQGLIAINSGEIVTWILSNFESVSDIKNNISKVVVTSDDIPSLGELGKGNPITAHYTFTDKMGESV VLEPTNHGHFRVFDNTVGVMANDPTFDWHMTNLANYIQVQGFNKQQNNLNSKTVITPISNGTGMLGLPGDYTSPSRFVRV AYLRNLIGDITDEEAPARLFSILNSVWVPKDVERFYEDKKDSDFSSYMCAYDQNLGKLYLRVFNHIDTMEFSLENVKEDE LVTYSVQ
Specific function: The enzyme catalyzes the conversion of penicillin to 6- aminopenicillanate The precursor, furthermore, acts as a self- processing peptidase that cleaves off the propeptide. All peptidase activity is lost on conversion to the mature peptidase [H]
COG id: COG3049
COG function: function code M; Penicillin V acylase and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase C59 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003199 [H]
Pfam domain/function: PF02275 CBAH [H]
EC number: =3.5.1.11 [H]
Molecular weight: Translated: 36863; Mature: 36863
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCTHIHISSVKNNLYWGRTLDTSFNPFDVDSKVTIVPRNFTLKTQSKPWKTKYAFLGINL CCEEEEHHHHCCCEEECEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCEEEEEEEEEE CGSTLFFDGVNEKGLAGGLLFLKACTWDKKENIEKQGLIAINSGEIVTWILSNFESVSDI CCCEEEECCCCCCCCCCCEEEEEEECCCHHHCCCCCCEEEECCCCEEEEEHHCCHHHHHH KNNISKVVVTSDDIPSLGELGKGNPITAHYTFTDKMGESVVLEPTNHGHFRVFDNTVGVM HHCCEEEEEECCCCCCHHHCCCCCCEEEEEEEHHCCCCEEEEECCCCCCEEEECCCEEEE ANDPTFDWHMTNLANYIQVQGFNKQQNNLNSKTVITPISNGTGMLGLPGDYTSPSRFVRV ECCCCCEEEHHHHHCEEEEECCCCHHCCCCCCEEEEECCCCCEEEECCCCCCCHHHHHHH AYLRNLIGDITDEEAPARLFSILNSVWVPKDVERFYEDKKDSDFSSYMCAYDQNLGKLYL HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH RVFNHIDTMEFSLENVKEDELVTYSVQ HHHHHHCHHHHHHCCCCCCCEEEEEEC >Mature Secondary Structure MCTHIHISSVKNNLYWGRTLDTSFNPFDVDSKVTIVPRNFTLKTQSKPWKTKYAFLGINL CCEEEEHHHHCCCEEECEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCEEEEEEEEEE CGSTLFFDGVNEKGLAGGLLFLKACTWDKKENIEKQGLIAINSGEIVTWILSNFESVSDI CCCEEEECCCCCCCCCCCEEEEEEECCCHHHCCCCCCEEEECCCCEEEEEHHCCHHHHHH KNNISKVVVTSDDIPSLGELGKGNPITAHYTFTDKMGESVVLEPTNHGHFRVFDNTVGVM HHCCEEEEEECCCCCCHHHCCCCCCEEEEEEEHHCCCCEEEEECCCCCCEEEECCCEEEE ANDPTFDWHMTNLANYIQVQGFNKQQNNLNSKTVITPISNGTGMLGLPGDYTSPSRFVRV ECCCCCEEEHHHHHCEEEEECCCCHHCCCCCCEEEEECCCCCEEEECCCCCCCHHHHHHH AYLRNLIGDITDEEAPARLFSILNSVWVPKDVERFYEDKKDSDFSSYMCAYDQNLGKLYL HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHH RVFNHIDTMEFSLENVKEDELVTYSVQ HHHHHHCHHHHHHCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3026906 [H]