Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is 18310072

Identifier: 18310072

GI number: 18310072

Start: 1292023

End: 1292499

Strand: Reverse

Name: 18310072

Synonym: CPE1090

Alternate gene names: NA

Gene position: 1292499-1292023 (Counterclockwise)

Preceding gene: 18310073

Following gene: 18310069

Centisome position: 42.64

GC content: 27.25

Gene sequence:

>477_bases
ATGAATATGAATAACTTTGAAAAACTTTATACTATTGAAGACATAGCAAAGATGACTAGACTTACTTCACGTACCATTAG
AAACTATCTTAAAGATGGAATATTAGAAGGCAAGAAAATTGGTGGGCAATGGAGATTTACTATGAAGGATATTGAAAACT
TTTTTGATAACAGTAAATCTAAAGAAGAGGTAAGAGCTACCCAAAATAATGAAGTACTTGATTTTTTAAAAGGGAAAAAT
GTAGATTCACAAAAAGAAGTACAGATCTGTACTATAATAGACCTTCATTGTAAAAATATATTAGAAGGAAAAGAATTATC
TAAAAAATTAATTACAATAATAAATGAAGATGAAGAGGCTGTTAAAAATGGAGCTAAATTTTCTTATGAATATATAAAAG
AATCTTCTAAAGCACGTTTTGCCCTATTTGGCGATCCTGAATTCATAATAAAAACACTAAAAACCCTTGAAAAATAA

Upstream 100 bases:

>100_bases
ATTATCTTCTCTAGTTTTTTTATATTCCCATTTTTACATCTGTATACTTGAAATATGAAAATATATGAAATATAATGAAA
ATATAGGAATTGAGAGGTGT

Downstream 100 bases:

>100_bases
ACATTATCCTTAAGTATATTATATAGTAATATACTTAAGGAGTTATTAAACTTCTATATATTCATCTCTTATGTACTTTT
GCTTTAAGTAATATAATTCC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MNMNNFEKLYTIEDIAKMTRLTSRTIRNYLKDGILEGKKIGGQWRFTMKDIENFFDNSKSKEEVRATQNNEVLDFLKGKN
VDSQKEVQICTIIDLHCKNILEGKELSKKLITIINEDEEAVKNGAKFSYEYIKESSKARFALFGDPEFIIKTLKTLEK

Sequences:

>Translated_158_residues
MNMNNFEKLYTIEDIAKMTRLTSRTIRNYLKDGILEGKKIGGQWRFTMKDIENFFDNSKSKEEVRATQNNEVLDFLKGKN
VDSQKEVQICTIIDLHCKNILEGKELSKKLITIINEDEEAVKNGAKFSYEYIKESSKARFALFGDPEFIIKTLKTLEK
>Mature_158_residues
MNMNNFEKLYTIEDIAKMTRLTSRTIRNYLKDGILEGKKIGGQWRFTMKDIENFFDNSKSKEEVRATQNNEVLDFLKGKN
VDSQKEVQICTIIDLHCKNILEGKELSKKLITIINEDEEAVKNGAKFSYEYIKESSKARFALFGDPEFIIKTLKTLEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18384; Mature: 18384

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMNNFEKLYTIEDIAKMTRLTSRTIRNYLKDGILEGKKIGGQWRFTMKDIENFFDNSKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCC
KEEVRATQNNEVLDFLKGKNVDSQKEVQICTIIDLHCKNILEGKELSKKLITIINEDEEA
HHHHHHCCCCHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHH
VKNGAKFSYEYIKESSKARFALFGDPEFIIKTLKTLEK
HHCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MNMNNFEKLYTIEDIAKMTRLTSRTIRNYLKDGILEGKKIGGQWRFTMKDIENFFDNSKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCC
KEEVRATQNNEVLDFLKGKNVDSQKEVQICTIIDLHCKNILEGKELSKKLITIINEDEEA
HHHHHHCCCCHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHCHHHHHHHHHHHHCCCHHH
VKNGAKFSYEYIKESSKARFALFGDPEFIIKTLKTLEK
HHCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA