| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is ytfP [H]
Identifier: 18309935
GI number: 18309935
Start: 1150930
End: 1152141
Strand: Direct
Name: ytfP [H]
Synonym: CPE0953
Alternate gene names: 18309935
Gene position: 1150930-1152141 (Clockwise)
Preceding gene: 18309933
Following gene: 18309936
Centisome position: 37.97
GC content: 29.62
Gene sequence:
>1212_bases ATGAGTAAGAAAAAGGTAATAGTAGTTGGGGGAGGCCCGGCAGGAATAATGGCATCTTTAACAGCATCAGCTAATAATGA GGCTGTGCTTATAGAGAGAAATAATGAGATAGGTAAAAAGCTTAGACTTACTGGTGGTGGAAGATGTAATATAACTAACA ATAGGGAAATAGAAGAGTTTTTTGATAAGATAGTTACAAATAACAAGTTTATGTATAGTGCATTATATACATTTTCAAAC TATCAACTTTTAGACTTTTTAAGTAAAAAGGGCTTAGAGTATAAGGTTGAATTAGATCAAAAAGTATATACTAAAAGTGA TACAGCAGAAGAAGTAATAAGCATATTTAAAAATGAATTAAATGATTGCAGAGTAAAAGTTTTATATAATACTAAGGTAT GTGATTTTATAGTTGAGGAAGATGAAATAAAAGGAATAATCACAGAGCAAGGTAAAAAGATTTTAGGTGATAAAATAATA ATAACTACAGGTGGAAAGAGTTTTCCTAATACAGGGTCAGATGGAGAAATGTATAGTATATTAGAAAAATATGGTCACAC AATAACTCCTATTCATGCAGCCTTAATTCCTCTTGTTACTAAAGAAGACTTCGTTAAAAATCTTCAAGGAGTAGCGATGA AAGATGTGGTTGTTTCAGCTAAAATAAAAAAGAAAAAGTATGAGAAATTTGGAGATATGATATTTACTCACTTTGGAGTA TCTGGTCCTGCAATACTAAAATTATCTTCTTATATAACTAAGGCTTTAGATCAAGGAGAGGTTGAGTTAAACTTAGACTT TTTAAGTGATAAATCCAAGGAGGAATTATCCCAGATAATAAGAAGCAATACTAATAAAACTGTATTAAATAATTTAAAAG GAACATTACCACAAAACTTTTTAAAACAGATATTTGAAGTGCTAGGATTAACAGAGATTAAGGCTAGTGATTTGAAAAAA GAAGATGAAAATAAAATAATTTCATATATTAAAGAGATGAAACTTACTGTAAGAGAAACTTTAACTATAAAGGCAGCACA GGTAACTTCTGGTGGAGTTAAGGTTAAAGAAATAAACGCCTCTACTATGGAATCAAAGATTATAAAAAATCTTTATTTTG CAGGAGAAGTTATAGATATAGATGCAGAAACTGGTGGATATAATCTTCAAATGGCATTTTCAACAGGATACTTAGCAGGA AGTGATTTTTAA
Upstream 100 bases:
>100_bases AAAATTAAATTATTAAAAGTAGAATTTAATTTCAGTTAATCATAAAGAATAAGATATGAATTTTTGGAGATATTTTCAAA ATAAAATTTGGAGGCAACAA
Downstream 100 bases:
>100_bases ATTCTTTAATTAAAATTATCAAAGTAAAAATTTACAAAGGATATGGGAATTCATTTAGTAATTCTCAAAATCTCTTTGTA AGTTTTTTATATTTTAAAGG
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 403; Mature: 402
Protein sequence:
>403_residues MSKKKVIVVGGGPAGIMASLTASANNEAVLIERNNEIGKKLRLTGGGRCNITNNREIEEFFDKIVTNNKFMYSALYTFSN YQLLDFLSKKGLEYKVELDQKVYTKSDTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKII ITTGGKSFPNTGSDGEMYSILEKYGHTITPIHAALIPLVTKEDFVKNLQGVAMKDVVVSAKIKKKKYEKFGDMIFTHFGV SGPAILKLSSYITKALDQGEVELNLDFLSDKSKEELSQIIRSNTNKTVLNNLKGTLPQNFLKQIFEVLGLTEIKASDLKK EDENKIISYIKEMKLTVRETLTIKAAQVTSGGVKVKEINASTMESKIIKNLYFAGEVIDIDAETGGYNLQMAFSTGYLAG SDF
Sequences:
>Translated_403_residues MSKKKVIVVGGGPAGIMASLTASANNEAVLIERNNEIGKKLRLTGGGRCNITNNREIEEFFDKIVTNNKFMYSALYTFSN YQLLDFLSKKGLEYKVELDQKVYTKSDTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKII ITTGGKSFPNTGSDGEMYSILEKYGHTITPIHAALIPLVTKEDFVKNLQGVAMKDVVVSAKIKKKKYEKFGDMIFTHFGV SGPAILKLSSYITKALDQGEVELNLDFLSDKSKEELSQIIRSNTNKTVLNNLKGTLPQNFLKQIFEVLGLTEIKASDLKK EDENKIISYIKEMKLTVRETLTIKAAQVTSGGVKVKEINASTMESKIIKNLYFAGEVIDIDAETGGYNLQMAFSTGYLAG SDF >Mature_402_residues SKKKVIVVGGGPAGIMASLTASANNEAVLIERNNEIGKKLRLTGGGRCNITNNREIEEFFDKIVTNNKFMYSALYTFSNY QLLDFLSKKGLEYKVELDQKVYTKSDTAEEVISIFKNELNDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIII TTGGKSFPNTGSDGEMYSILEKYGHTITPIHAALIPLVTKEDFVKNLQGVAMKDVVVSAKIKKKKYEKFGDMIFTHFGVS GPAILKLSSYITKALDQGEVELNLDFLSDKSKEELSQIIRSNTNKTVLNNLKGTLPQNFLKQIFEVLGLTEIKASDLKKE DENKIISYIKEMKLTVRETLTIKAAQVTSGGVKVKEINASTMESKIIKNLYFAGEVIDIDAETGGYNLQMAFSTGYLAGS DF
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367234, Length=388, Percent_Identity=27.8350515463918, Blast_Score=179, Evalue=4e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 44785; Mature: 44654
Theoretical pI: Translated: 8.36; Mature: 8.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKKVIVVGGGPAGIMASLTASANNEAVLIERNNEIGKKLRLTGGGRCNITNNREIEEF CCCCEEEEECCCCCCHHEEEEECCCCCEEEEECCCCCCCEEEECCCCEEECCCCCCHHHH FDKIVTNNKFMYSALYTFSNYQLLDFLSKKGLEYKVELDQKVYTKSDTAEEVISIFKNEL HHHHHCCCCEEEEEEHHCCCCHHHHHHHHCCCEEEEEECCHHHCCCCCHHHHHHHHHHCC NDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGKSFPNTGSDGEMYSI CCEEEEEEECCCCEEEEECHHHHCCHHHHCCHHHHCCEEEEEECCCCCCCCCCCCHHHHH LEKYGHTITPIHAALIPLVTKEDFVKNLQGVAMKDVVVSAKIKKKKYEKFGDMIFTHFGV HHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC SGPAILKLSSYITKALDQGEVELNLDFLSDKSKEELSQIIRSNTNKTVLNNLKGTLPQNF CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCCHHH LKQIFEVLGLTEIKASDLKKEDENKIISYIKEMKLTVRETLTIKAAQVTSGGVKVKEINA HHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCH STMESKIIKNLYFAGEVIDIDAETGGYNLQMAFSTGYLAGSDF HHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCC >Mature Secondary Structure SKKKVIVVGGGPAGIMASLTASANNEAVLIERNNEIGKKLRLTGGGRCNITNNREIEEF CCCEEEEECCCCCCHHEEEEECCCCCEEEEECCCCCCCEEEECCCCEEECCCCCCHHHH FDKIVTNNKFMYSALYTFSNYQLLDFLSKKGLEYKVELDQKVYTKSDTAEEVISIFKNEL HHHHHCCCCEEEEEEHHCCCCHHHHHHHHCCCEEEEEECCHHHCCCCCHHHHHHHHHHCC NDCRVKVLYNTKVCDFIVEEDEIKGIITEQGKKILGDKIIITTGGKSFPNTGSDGEMYSI CCEEEEEEECCCCEEEEECHHHHCCHHHHCCHHHHCCEEEEEECCCCCCCCCCCCHHHHH LEKYGHTITPIHAALIPLVTKEDFVKNLQGVAMKDVVVSAKIKKKKYEKFGDMIFTHFGV HHHHCCCCCHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC SGPAILKLSSYITKALDQGEVELNLDFLSDKSKEELSQIIRSNTNKTVLNNLKGTLPQNF CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHCCCCCHHH LKQIFEVLGLTEIKASDLKKEDENKIISYIKEMKLTVRETLTIKAAQVTSGGVKVKEINA HHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCH STMESKIIKNLYFAGEVIDIDAETGGYNLQMAFSTGYLAGSDF HHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]