Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

Click here to switch to the map view.

The map label for this gene is 18309903

Identifier: 18309903

GI number: 18309903

Start: 1121179

End: 1121721

Strand: Direct

Name: 18309903

Synonym: CPE0921

Alternate gene names: NA

Gene position: 1121179-1121721 (Clockwise)

Preceding gene: 18309901

Following gene: 18309904

Centisome position: 36.99

GC content: 27.62

Gene sequence:

>543_bases
ATGAATTTTTTTGATTTAGTTAATAAAAGAGAAAGTGTAAGAGGGTATTTAGATAAAGAAGTTGAAAAAGAAAAGATAAT
AAAAATAATAGAAGCAGCAAGGGTAGCACCATCAGCTTGCAATGCACAACCTTGGAAATTTGTTGTTAATGATAAAAATT
TAGTTAGAAAAATTGCAGAGAATTTATATGATCCTATGATAGGAATTAATAAATTTGCTATTACCTCACCAGCATTTATA
GTTGTGGTTGGAGAAAAGAGAAATTTAACATCTAAAATGGGAGAGCTTATAAAGAAGAAGGATTATACTTCTATGGATAT
AGGAATAGCATCAGAACATTTATGTTTGGCAGCCACCGAGCTAGGACTTGGAACCTGTATGATGGGATGGTTTAAAGAAA
AAAATATCAAAAAGCTTATTAATATTCCTACAAATAAAGAAATCCATTTAGTAATTTCATTAGGATACTATGATGAAAAG
GTTACAAGAAGAAAAATAAGAAAGAATATTGATGAAATTTATTCTTTTAATAAATATAAATAA

Upstream 100 bases:

>100_bases
TATAGTGATTAAAAGTATGACATTGCTTACAGCATACCTTTTAATTTTGTAATATTGTTTAAAGATAAATATGAAATTTA
TAATTAATGGGAGTGGAACA

Downstream 100 bases:

>100_bases
GTAAAGAGCAAACTAGCAAATAAGAAGCTAGTTTGCTTTTTTAAAAAGATAATTCATTTAATCTTTAATTTGATTGAAAC
ATAATGGCATTTAAGTCAGC

Product: nitroreductase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MNFFDLVNKRESVRGYLDKEVEKEKIIKIIEAARVAPSACNAQPWKFVVNDKNLVRKIAENLYDPMIGINKFAITSPAFI
VVVGEKRNLTSKMGELIKKKDYTSMDIGIASEHLCLAATELGLGTCMMGWFKEKNIKKLINIPTNKEIHLVISLGYYDEK
VTRRKIRKNIDEIYSFNKYK

Sequences:

>Translated_180_residues
MNFFDLVNKRESVRGYLDKEVEKEKIIKIIEAARVAPSACNAQPWKFVVNDKNLVRKIAENLYDPMIGINKFAITSPAFI
VVVGEKRNLTSKMGELIKKKDYTSMDIGIASEHLCLAATELGLGTCMMGWFKEKNIKKLINIPTNKEIHLVISLGYYDEK
VTRRKIRKNIDEIYSFNKYK
>Mature_180_residues
MNFFDLVNKRESVRGYLDKEVEKEKIIKIIEAARVAPSACNAQPWKFVVNDKNLVRKIAENLYDPMIGINKFAITSPAFI
VVVGEKRNLTSKMGELIKKKDYTSMDIGIASEHLCLAATELGLGTCMMGWFKEKNIKKLINIPTNKEIHLVISLGYYDEK
VTRRKIRKNIDEIYSFNKYK

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 20709; Mature: 20709

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFFDLVNKRESVRGYLDKEVEKEKIIKIIEAARVAPSACNAQPWKFVVNDKNLVRKIAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH
NLYDPMIGINKFAITSPAFIVVVGEKRNLTSKMGELIKKKDYTSMDIGIASEHLCLAATE
HHHCHHCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LGLGTCMMGWFKEKNIKKLINIPTNKEIHLVISLGYYDEKVTRRKIRKNIDEIYSFNKYK
HCHHHHHHHHHHHCCHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNFFDLVNKRESVRGYLDKEVEKEKIIKIIEAARVAPSACNAQPWKFVVNDKNLVRKIAE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHH
NLYDPMIGINKFAITSPAFIVVVGEKRNLTSKMGELIKKKDYTSMDIGIASEHLCLAATE
HHHCHHCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
LGLGTCMMGWFKEKNIKKLINIPTNKEIHLVISLGYYDEKVTRRKIRKNIDEIYSFNKYK
HCHHHHHHHHHHHCCHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]