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The map label for this gene is pduJ [H]

Identifier: 18309883

GI number: 18309883

Start: 1103102

End: 1103887

Strand: Direct

Name: pduJ [H]

Synonym: CPE0901

Alternate gene names: 18309883

Gene position: 1103102-1103887 (Clockwise)

Preceding gene: 18309882

Following gene: 18309884

Centisome position: 36.39

GC content: 29.9

Gene sequence:

>786_bases
ATGGGAAAAGCTTTAGGATTAATAGAATTTATAGGATATGTACCAGCCATCTGTGCTGCAGATACAGCCTTAAAAGCTGC
AAGTGTTGATTTGATTGGAATAGAAAAGGTTACTGGAGGAATTGTAACTGTAAAAATTACAGGAGATGTAGATGCTGTAC
AAGCTGCAGTGGAATCTGCTGAAAATTATGCAAGTAGAATTGGAAGTTTAAGAAGTGCTCATGTAATTCCAAGACTTGAT
GATGAGGTAGAGAATCTTTTAATGAATAGTAAAAGTTCAGAAGAAGAGATACAAGAAGAATTTAAAGAGTTGGAAGAAGA
TATTAAAGAGGTTTGTGAAGAGATAAGAGAGGAAATTACAGAAACTATTATAGAGGAAACAGAATCTAAAGAAGAAAGCC
TACAAGAAGATGTTGTTGAATATGTTAAAAATGTTAATGATGAAGTAGAAGAAATTTCTGAAAAAATAGAAGGTGAATCT
CACTTAGATGAAATAGAAGTTTTTGAAATCTCTCAAAATAAAGAAAACTCAAAAGAATCTTTAGAAGAAGTTATTATAAA
ACCTGAACTGATAGAAGGTAAGAAAGAATATTCAGAGGATAAGACCACAGAGAATAAAGAAGCTGATTCTATAGATATAA
AAGAAATATCTAAAATGAGTGTTAAGGAATTAAGAAAGAAAATAAAAGCCTTAAATATGAACATAACTTCTAATAAGCTT
AAGTCTCTAAAGAAGAAAGATTTAGTAGATATATTACTAAAATATAGTGAAGAAGGTGACAGTTAA

Upstream 100 bases:

>100_bases
TACAGGATCACAATCAGCATGTAAAGCAGCATGTGATGCCTTTGCAGAGGCAGTACAATCAGTAGCTAGTAATCCATTAG
GATTCTAATAGGCTAAAGAT

Downstream 100 bases:

>100_bases
TGGAGTTTTTAGATAAAGACTTAGTTTCCATACAGGAAACTAGGGGGCTTATAAGAAAGGCTAAAGAAGCTCAAAGCAAG
TTAGCCCGTATGAGTCAACA

Product: propanediol utilization protein

Products: NA

Alternate protein names: Carboxysome shell protein CsoS1 [H]

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MGKALGLIEFIGYVPAICAADTALKAASVDLIGIEKVTGGIVTVKITGDVDAVQAAVESAENYASRIGSLRSAHVIPRLD
DEVENLLMNSKSSEEEIQEEFKELEEDIKEVCEEIREEITETIIEETESKEESLQEDVVEYVKNVNDEVEEISEKIEGES
HLDEIEVFEISQNKENSKESLEEVIIKPELIEGKKEYSEDKTTENKEADSIDIKEISKMSVKELRKKIKALNMNITSNKL
KSLKKKDLVDILLKYSEEGDS

Sequences:

>Translated_261_residues
MGKALGLIEFIGYVPAICAADTALKAASVDLIGIEKVTGGIVTVKITGDVDAVQAAVESAENYASRIGSLRSAHVIPRLD
DEVENLLMNSKSSEEEIQEEFKELEEDIKEVCEEIREEITETIIEETESKEESLQEDVVEYVKNVNDEVEEISEKIEGES
HLDEIEVFEISQNKENSKESLEEVIIKPELIEGKKEYSEDKTTENKEADSIDIKEISKMSVKELRKKIKALNMNITSNKL
KSLKKKDLVDILLKYSEEGDS
>Mature_260_residues
GKALGLIEFIGYVPAICAADTALKAASVDLIGIEKVTGGIVTVKITGDVDAVQAAVESAENYASRIGSLRSAHVIPRLDD
EVENLLMNSKSSEEEIQEEFKELEEDIKEVCEEIREEITETIIEETESKEESLQEDVVEYVKNVNDEVEEISEKIEGESH
LDEIEVFEISQNKENSKESLEEVIIKPELIEGKKEYSEDKTTENKEADSIDIKEISKMSVKELRKKIKALNMNITSNKLK
SLKKKDLVDILLKYSEEGDS

Specific function: May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered [H]

COG id: COG4577

COG function: function code QC; Carbon dioxide concentrating mechanism/carboxysome shell protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial microcompartments protein family [H]

Homologues:

Organism=Escherichia coli, GI87082108, Length=81, Percent_Identity=45.679012345679, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020808
- InterPro:   IPR000249 [H]

Pfam domain/function: PF00936 BMC [H]

EC number: NA

Molecular weight: Translated: 29257; Mature: 29126

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKALGLIEFIGYVPAICAADTALKAASVDLIGIEKVTGGIVTVKITGDVDAVQAAVESA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEHHHHCCCEEEEEECCCHHHHHHHHHHH
ENYASRIGSLRSAHVIPRLDDEVENLLMNSKSSEEEIQEEFKELEEDIKEVCEEIREEIT
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETIIEETESKEESLQEDVVEYVKNVNDEVEEISEKIEGESHLDEIEVFEISQNKENSKES
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHEEECCCCCCCHHHH
LEEVIIKPELIEGKKEYSEDKTTENKEADSIDIKEISKMSVKELRKKIKALNMNITSNKL
HHHHHHCCHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
KSLKKKDLVDILLKYSEEGDS
HHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GKALGLIEFIGYVPAICAADTALKAASVDLIGIEKVTGGIVTVKITGDVDAVQAAVESA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEHHHHCCCEEEEEECCCHHHHHHHHHHH
ENYASRIGSLRSAHVIPRLDDEVENLLMNSKSSEEEIQEEFKELEEDIKEVCEEIREEIT
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ETIIEETESKEESLQEDVVEYVKNVNDEVEEISEKIEGESHLDEIEVFEISQNKENSKES
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHEEECCCCCCCHHHH
LEEVIIKPELIEGKKEYSEDKTTENKEADSIDIKEISKMSVKELRKKIKALNMNITSNKL
HHHHHHCCHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
KSLKKKDLVDILLKYSEEGDS
HHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917486 [H]