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The map label for this gene is pdtaR [H]

Identifier: 18309877

GI number: 18309877

Start: 1096475

End: 1097050

Strand: Direct

Name: pdtaR [H]

Synonym: CPE0895

Alternate gene names: 18309877

Gene position: 1096475-1097050 (Clockwise)

Preceding gene: 18309876

Following gene: 18309878

Centisome position: 36.17

GC content: 29.69

Gene sequence:

>576_bases
ATGAAAAGAACTATAGTAATAGTCGATGATGAGCCTATTACAAGAATGGATACAAGAGAAATTTTAGAGGCTAATGGATA
CGATGTTGTAGGAGAGGCTTCTGATGGTTTTGAAGCAATTGAAGTTTGTAAGAAATATAATCCTAGCTTAGTTTTAATGG
ACATAGATATGCCTTTATTAGATGGAATAAAAGCTAGTAAGGTATTAACTAAGGAAAAATTAGTTGGGGGCGTAATATTA
TTAACAGCATTTGAAGACAAAAAGTATATTGAAATGGCTAAAGAAGTAGGAGCCTTTGGATATATGATTAAGCCTGTAAA
TGAGAAGGTATTTATTCCTACTGTAGAAATGTGCTTATCAAAGGCAGAAGAATTTGATGAACTAAAAAAAGATTATGATA
AAATAAACAATAAATTAAATGATAGAAAGTTAATAGAGAAGGCAAAAGGAATACTTGTTAAGCAATTAAACTCAAATGAG
AATGATGCTTATAACAGAATAAGAAAATTAAGTATGGATAGAAGAACTACCATGGCTGAAATAGCAAAAATAATAATTGT
TGGTTATGAGGGATAA

Upstream 100 bases:

>100_bases
CTGGAGTAAGTAAAATATTTAAAGTTGATACAGTAGATGATGTAGGAATTAAAGAGTTATTTAATTATCTAAACAAATTT
TAATTTGAGGTGAACTGTTA

Downstream 100 bases:

>100_bases
TTAATGATTGGAACACTATGTAAAGAATACACTCTTTTAAGTGAAGAGGAGATAAATAAAATAAGAGAAGTTTCAAAATC
TCTACAGATTATGGCTGACT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKRTIVIVDDEPITRMDTREILEANGYDVVGEASDGFEAIEVCKKYNPSLVLMDIDMPLLDGIKASKVLTKEKLVGGVIL
LTAFEDKKYIEMAKEVGAFGYMIKPVNEKVFIPTVEMCLSKAEEFDELKKDYDKINNKLNDRKLIEKAKGILVKQLNSNE
NDAYNRIRKLSMDRRTTMAEIAKIIIVGYEG

Sequences:

>Translated_191_residues
MKRTIVIVDDEPITRMDTREILEANGYDVVGEASDGFEAIEVCKKYNPSLVLMDIDMPLLDGIKASKVLTKEKLVGGVIL
LTAFEDKKYIEMAKEVGAFGYMIKPVNEKVFIPTVEMCLSKAEEFDELKKDYDKINNKLNDRKLIEKAKGILVKQLNSNE
NDAYNRIRKLSMDRRTTMAEIAKIIIVGYEG
>Mature_191_residues
MKRTIVIVDDEPITRMDTREILEANGYDVVGEASDGFEAIEVCKKYNPSLVLMDIDMPLLDGIKASKVLTKEKLVGGVIL
LTAFEDKKYIEMAKEVGAFGYMIKPVNEKVFIPTVEMCLSKAEEFDELKKDYDKINNKLNDRKLIEKAKGILVKQLNSNE
NDAYNRIRKLSMDRRTTMAEIAKIIIVGYEG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=141, Percent_Identity=26.241134751773, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87082052, Length=105, Percent_Identity=36.1904761904762, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788550, Length=136, Percent_Identity=30.8823529411765, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1790863, Length=118, Percent_Identity=33.8983050847458, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1788222, Length=101, Percent_Identity=33.6633663366337, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1788712, Length=111, Percent_Identity=27.027027027027, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21675; Mature: 21675

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTIVIVDDEPITRMDTREILEANGYDVVGEASDGFEAIEVCKKYNPSLVLMDIDMPLL
CCEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHH
DGIKASKVLTKEKLVGGVILLTAFEDKKYIEMAKEVGAFGYMIKPVNEKVFIPTVEMCLS
CCCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHCHHCEEEECCCCEEECCHHHHHHH
KAEEFDELKKDYDKINNKLNDRKLIEKAKGILVKQLNSNENDAYNRIRKLSMDRRTTMAE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHH
IAKIIIVGYEG
HHEEEEEEECC
>Mature Secondary Structure
MKRTIVIVDDEPITRMDTREILEANGYDVVGEASDGFEAIEVCKKYNPSLVLMDIDMPLL
CCEEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHH
DGIKASKVLTKEKLVGGVILLTAFEDKKYIEMAKEVGAFGYMIKPVNEKVFIPTVEMCLS
CCCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHCHHCEEEECCCCEEECCHHHHHHH
KAEEFDELKKDYDKINNKLNDRKLIEKAKGILVKQLNSNENDAYNRIRKLSMDRRTTMAE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHH
IAKIIIVGYEG
HHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]