| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is bdhA [H]
Identifier: 18309840
GI number: 18309840
Start: 1051286
End: 1052458
Strand: Direct
Name: bdhA [H]
Synonym: CPE0858
Alternate gene names: 18309840
Gene position: 1051286-1052458 (Clockwise)
Preceding gene: 18309838
Following gene: 18309841
Centisome position: 34.68
GC content: 31.46
Gene sequence:
>1173_bases ATGAATAATTTTACTTTTTATAATCCTACTAAAATTAACTTTGGTAGAGGAGTTGAATCCTCTGTTGGAGAAGAGATTAA AAGCTTAGGAGCTAGTAAAGTGCTTTTTCATTATGGTGGAGGAAGTATTAGAAAAAATGGGTTATATGATAGAATTTTAG ATTCTTTAAATAAAGCAGGATTACATGTAATAGAACTTGGAGGAGTTAAGCCTAATCCTAGATTAAGCTTAGTTAAAAAG GGAATAGAACTTTGTAAAAATAGTAAAGTTGATTTTATACTTGCAGTTGGAGGAGGAAGTGTTATTGACTCAGCTAAAGC CATAGCTCTTGGTGTTCCTTATGATGGAGATGTATGGGATTTCTTTACTAAAAATATTAAAATAGAAAAAGCTTTACCAT TAGGTACAGTATTAACAATACCAGCGGCAGGAAGTGAATCAAGCTCAGGAACTGTTATAACTAATGAAGATGGATGGTAT AAGAGATCAACAGGATCACCACTTCTATATCCTAAATTTTCAATGTTAAATCCAGAACTATGCTTTACTTTACCAGAATA TCAAATAGCATCAGGAAGTGCAGATATTTTAGCACATTTAATGGAAAGATATTTCACAAACACAAAGAATGTTGAACTTA TAGATAGATTAATTGAGGGAACAATGAAAACAGTAATAAATAATGTTCCTAAGGTATTAAAAAATAAGGAAGACTATGAT AGCTTTGCAGAGGTTATGTGGGCTGGAACAATAGCACATAATAATCTTTTAAGCACAGGAAGAGAAACAGATTGGGCATC ACATAATATAGAACATGAATTAAGTGGAATATATGATGTTACTCATGGTGCAGGATTAGCTGTTATATTCCCAGCTTGGA TGAAGTTTGTTTATAAGCATGATTTAGATAGATTCAACCAATTTGCTACTAGAGTATTTGATGTTCAAGTTGAAGATAAA ACTAAGGAAGAGGTTGCCTTAGAAGGAATTAAGAAACTTGAAGAATTCTTCAAATCAATAAATCTTCCAGTAACTTTAAA AGAGTTAGAAATAGGTGAAGATAGATTAGAAGAAATGGCTAAAAAATGCACAGATAATGATGAGCATACAGTAGGTCATT TTGTAGAATTAAACACAGAGGACATCCTTGAAATATACAAATTAGCTTTATAG
Upstream 100 bases:
>100_bases ATATATTTATATAATCTTTTACTTAAAATTAAAAGTGATATATAATATTGTAAACGTAATTAATTCAAATAATATGGAAA AAAGAGAAAGGGTGAGTTAA
Downstream 100 bases:
>100_bases GATATTTTACCCTTAAGAAAATAAATAATAGCAAGTAGGAAAATAACTATATGTAAAATAGTATGGTATGTATCAAAATA ACTTTTTAATAAAACTTTTA
Product: NADH-dependent butanol dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 390; Mature: 390
Protein sequence:
>390_residues MNNFTFYNPTKINFGRGVESSVGEEIKSLGASKVLFHYGGGSIRKNGLYDRILDSLNKAGLHVIELGGVKPNPRLSLVKK GIELCKNSKVDFILAVGGGSVIDSAKAIALGVPYDGDVWDFFTKNIKIEKALPLGTVLTIPAAGSESSSGTVITNEDGWY KRSTGSPLLYPKFSMLNPELCFTLPEYQIASGSADILAHLMERYFTNTKNVELIDRLIEGTMKTVINNVPKVLKNKEDYD SFAEVMWAGTIAHNNLLSTGRETDWASHNIEHELSGIYDVTHGAGLAVIFPAWMKFVYKHDLDRFNQFATRVFDVQVEDK TKEEVALEGIKKLEEFFKSINLPVTLKELEIGEDRLEEMAKKCTDNDEHTVGHFVELNTEDILEIYKLAL
Sequences:
>Translated_390_residues MNNFTFYNPTKINFGRGVESSVGEEIKSLGASKVLFHYGGGSIRKNGLYDRILDSLNKAGLHVIELGGVKPNPRLSLVKK GIELCKNSKVDFILAVGGGSVIDSAKAIALGVPYDGDVWDFFTKNIKIEKALPLGTVLTIPAAGSESSSGTVITNEDGWY KRSTGSPLLYPKFSMLNPELCFTLPEYQIASGSADILAHLMERYFTNTKNVELIDRLIEGTMKTVINNVPKVLKNKEDYD SFAEVMWAGTIAHNNLLSTGRETDWASHNIEHELSGIYDVTHGAGLAVIFPAWMKFVYKHDLDRFNQFATRVFDVQVEDK TKEEVALEGIKKLEEFFKSINLPVTLKELEIGEDRLEEMAKKCTDNDEHTVGHFVELNTEDILEIYKLAL >Mature_390_residues MNNFTFYNPTKINFGRGVESSVGEEIKSLGASKVLFHYGGGSIRKNGLYDRILDSLNKAGLHVIELGGVKPNPRLSLVKK GIELCKNSKVDFILAVGGGSVIDSAKAIALGVPYDGDVWDFFTKNIKIEKALPLGTVLTIPAAGSESSSGTVITNEDGWY KRSTGSPLLYPKFSMLNPELCFTLPEYQIASGSADILAHLMERYFTNTKNVELIDRLIEGTMKTVINNVPKVLKNKEDYD SFAEVMWAGTIAHNNLLSTGRETDWASHNIEHELSGIYDVTHGAGLAVIFPAWMKFVYKHDLDRFNQFATRVFDVQVEDK TKEEVALEGIKKLEEFFKSINLPVTLKELEIGEDRLEEMAKKCTDNDEHTVGHFVELNTEDILEIYKLAL
Specific function: Unknown
COG id: COG1979
COG function: function code C; Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789386, Length=395, Percent_Identity=35.6962025316456, Blast_Score=249, Evalue=2e-67, Organism=Escherichia coli, GI1789163, Length=401, Percent_Identity=24.6882793017456, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI48994951, Length=351, Percent_Identity=24.7863247863248, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI87082107, Length=333, Percent_Identity=24.3243243243243, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787493, Length=306, Percent_Identity=24.1830065359477, Blast_Score=69, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17537053, Length=201, Percent_Identity=25.3731343283582, Blast_Score=66, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6321181, Length=388, Percent_Identity=26.0309278350515, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001670 - InterPro: IPR018211 [H]
Pfam domain/function: PF00465 Fe-ADH [H]
EC number: 1.1.-.- [C]
Molecular weight: Translated: 43420; Mature: 43420
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: PS00060 ADH_IRON_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNFTFYNPTKINFGRGVESSVGEEIKSLGASKVLFHYGGGSIRKNGLYDRILDSLNKAG CCCCEECCCCEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC LHVIELGGVKPNPRLSLVKKGIELCKNSKVDFILAVGGGSVIDSAKAIALGVPYDGDVWD EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCCEEEEECCCCCCHHH FFTKNIKIEKALPLGTVLTIPAAGSESSSGTVITNEDGWYKRSTGSPLLYPKFSMLNPEL HHHCCEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCEECCCCCCEECCCHHHCCCHH CFTLPEYQIASGSADILAHLMERYFTNTKNVELIDRLIEGTMKTVINNVPKVLKNKEDYD EEECCCCEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH SFAEVMWAGTIAHNNLLSTGRETDWASHNIEHELSGIYDVTHGAGLAVIFPAWMKFVYKH HHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHH DLDRFNQFATRVFDVQVEDKTKEEVALEGIKKLEEFFKSINLPVTLKELEIGEDRLEEMA HHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHH KKCTDNDEHTVGHFVELNTEDILEIYKLAL HHCCCCCCCCCCEEEEECHHHHHHHHHHCC >Mature Secondary Structure MNNFTFYNPTKINFGRGVESSVGEEIKSLGASKVLFHYGGGSIRKNGLYDRILDSLNKAG CCCCEECCCCEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC LHVIELGGVKPNPRLSLVKKGIELCKNSKVDFILAVGGGSVIDSAKAIALGVPYDGDVWD EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCCEEEEECCCCCCHHH FFTKNIKIEKALPLGTVLTIPAAGSESSSGTVITNEDGWYKRSTGSPLLYPKFSMLNPEL HHHCCEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCEECCCCCCEECCCHHHCCCHH CFTLPEYQIASGSADILAHLMERYFTNTKNVELIDRLIEGTMKTVINNVPKVLKNKEDYD EEECCCCEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH SFAEVMWAGTIAHNNLLSTGRETDWASHNIEHELSGIYDVTHGAGLAVIFPAWMKFVYKH HHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHHHHHHH DLDRFNQFATRVFDVQVEDKTKEEVALEGIKKLEEFFKSINLPVTLKELEIGEDRLEEMA HHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHH KKCTDNDEHTVGHFVELNTEDILEIYKLAL HHCCCCCCCCCCEEEEECHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9274030; 9384377 [H]