| Definition | Clostridium perfringens str. 13, complete genome. |
|---|---|
| Accession | NC_003366 |
| Length | 3,031,430 |
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The map label for this gene is purH [H]
Identifier: 18309668
GI number: 18309668
Start: 853720
End: 855225
Strand: Direct
Name: purH [H]
Synonym: CPE0686
Alternate gene names: 18309668
Gene position: 853720-855225 (Clockwise)
Preceding gene: 18309667
Following gene: 18309669
Centisome position: 28.16
GC content: 30.94
Gene sequence:
>1506_bases ATGAAAAAGAGAGCTTTAATAAGTGTTTTTGATAAAGATGGAGTTTTAGAACTTGCAAAATTTTTAAGAGATAGAGATGT AGAAATAATATCAAGTGGTGGAACTTATAAATATTTAAAAGAAAATAACATAGAGGTTAAAGAGATAAGTGAAATAACTG ACTTCCCAGAAATGTTAGATGGAAGAGTAAAAACTCTACATCCTTTAGTTCATGCTGGAATATTAGCAATAAGAGATAAT AAAGAGCATATGAAAACTTTAGAAGAGAGAGAAATAAATACTATAGATTATGTAGTTGTAAATTTATATCCTTTCTTTGA AAAAGTTAGAGAGGATTTAAGCTTTGAAGAAAAGGTTGAGTTTATTGATATAGGTGGACCAACAATGTTAAGAGCAGCAG CTAAGAATTTTAAAGATGTGGTAGTTCTTTCAGATAAAAAAGATTATGAAAAAGTAATGAATGAAATTAAAGAAAATAAT TGTGTTTCATTTAAATTAAGAAAAACTCTTGCAGGAAAAGTATTTAACTTAATGAGTGCTTATGATGCTGCAATTTCTAA CTTCTTACTAGAGGGAGAAGAGGAATATCCAGAATATCTATCAGTTTCATATAAGAAAATTCAAGATCTTAGATATGGAG AAAATCCACATCAAGGAGCTGCTTATTATAGTTCAACAGAATTTGATGGAGCTATGAATAGCTTTGAAATTTTAAATGGA AAAGCTTTATCTTACAATAATATAAAGGATTTAGATATAGCATGGAAGGTTGCTTGTGAATTTGAAGAAACAGCTTGCTG TGCATTAAAACATAATACACCTTGTGGGGTAGCTGTAGGAGAAAATTCTAAAGAGGTTTATTTAAAGGCTTATGATGCTG ATCCAGTTTCAATATTTGGTGGAATAGTTGCTATAAATAGAAAGATAGATAAGGCTACAGCAGAAGAAATGGTTAAAATT TTCTTAGAGGTGGTAGCAGCACCAGATTTTGATGAAGATGCTTTAGAAGTATTAAGAACTAAAAAGAATTTAAGAGTTAT AAAATGTAAGAATACTCCTCAGGCTAAAAATTACATGGTAACAGTAGATGGTGGAATATTAGTTCAAGGAGAAGATAATA AACTTGCTAATGAGTATAAAGTTGTAACTGAAAAAGAGCCAACAGAAATGGAATTAAGAGATATGATCTTTGGAATGAAG GTTGTGAAATATGTAAAATCTAATGCTATAGTAGTTGTAAAAGATGGAGTTGCCACTGGTATTGGTGGAGGACAAGTTAA TAGAATTTGGGCTACTAAAGAAGCTTTAGAAAGAGGAAAAGGTGGAGCCGTTTTAGCATCAGATGCTTTCTTCCCATTTA GAGACTGTGTTGACGAAGCGGCTAAAAATGGAATAAAAGCAATAATTCAACCAGGTGGATCTATTAGAGATGAGGAGTCT ATAGAGGCTTGTAATGAACATGGAATAAGCATGGTATTTACAGGAGTTAGACATTTTAAACATTAG
Upstream 100 bases:
>100_bases GGAGCATATATTGCTACCTAGAATTGTTAAGTACTTATGCGAAGAAAAAATAGAAATTCATAATGGAAAAGTGAAAATAT TAAACTAGGGAGGTCTTTTA
Downstream 100 bases:
>100_bases AAATGAATAGATTTTAGGAGGTGAATTAGGTCATATAGTTAATTTGAATTTTAAATAGTTAATTATATAAGTTAAAACTA TTTAAACTAAGTTTAATTTA
Product: bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MKKRALISVFDKDGVLELAKFLRDRDVEIISSGGTYKYLKENNIEVKEISEITDFPEMLDGRVKTLHPLVHAGILAIRDN KEHMKTLEEREINTIDYVVVNLYPFFEKVREDLSFEEKVEFIDIGGPTMLRAAAKNFKDVVVLSDKKDYEKVMNEIKENN CVSFKLRKTLAGKVFNLMSAYDAAISNFLLEGEEEYPEYLSVSYKKIQDLRYGENPHQGAAYYSSTEFDGAMNSFEILNG KALSYNNIKDLDIAWKVACEFEETACCALKHNTPCGVAVGENSKEVYLKAYDADPVSIFGGIVAINRKIDKATAEEMVKI FLEVVAAPDFDEDALEVLRTKKNLRVIKCKNTPQAKNYMVTVDGGILVQGEDNKLANEYKVVTEKEPTEMELRDMIFGMK VVKYVKSNAIVVVKDGVATGIGGGQVNRIWATKEALERGKGGAVLASDAFFPFRDCVDEAAKNGIKAIIQPGGSIRDEES IEACNEHGISMVFTGVRHFKH
Sequences:
>Translated_501_residues MKKRALISVFDKDGVLELAKFLRDRDVEIISSGGTYKYLKENNIEVKEISEITDFPEMLDGRVKTLHPLVHAGILAIRDN KEHMKTLEEREINTIDYVVVNLYPFFEKVREDLSFEEKVEFIDIGGPTMLRAAAKNFKDVVVLSDKKDYEKVMNEIKENN CVSFKLRKTLAGKVFNLMSAYDAAISNFLLEGEEEYPEYLSVSYKKIQDLRYGENPHQGAAYYSSTEFDGAMNSFEILNG KALSYNNIKDLDIAWKVACEFEETACCALKHNTPCGVAVGENSKEVYLKAYDADPVSIFGGIVAINRKIDKATAEEMVKI FLEVVAAPDFDEDALEVLRTKKNLRVIKCKNTPQAKNYMVTVDGGILVQGEDNKLANEYKVVTEKEPTEMELRDMIFGMK VVKYVKSNAIVVVKDGVATGIGGGQVNRIWATKEALERGKGGAVLASDAFFPFRDCVDEAAKNGIKAIIQPGGSIRDEES IEACNEHGISMVFTGVRHFKH >Mature_501_residues MKKRALISVFDKDGVLELAKFLRDRDVEIISSGGTYKYLKENNIEVKEISEITDFPEMLDGRVKTLHPLVHAGILAIRDN KEHMKTLEEREINTIDYVVVNLYPFFEKVREDLSFEEKVEFIDIGGPTMLRAAAKNFKDVVVLSDKKDYEKVMNEIKENN CVSFKLRKTLAGKVFNLMSAYDAAISNFLLEGEEEYPEYLSVSYKKIQDLRYGENPHQGAAYYSSTEFDGAMNSFEILNG KALSYNNIKDLDIAWKVACEFEETACCALKHNTPCGVAVGENSKEVYLKAYDADPVSIFGGIVAINRKIDKATAEEMVKI FLEVVAAPDFDEDALEVLRTKKNLRVIKCKNTPQAKNYMVTVDGGILVQGEDNKLANEYKVVTEKEPTEMELRDMIFGMK VVKYVKSNAIVVVKDGVATGIGGGQVNRIWATKEALERGKGGAVLASDAFFPFRDCVDEAAKNGIKAIIQPGGSIRDEES IEACNEHGISMVFTGVRHFKH
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=465, Percent_Identity=36.5591397849462, Blast_Score=231, Evalue=1e-60, Organism=Escherichia coli, GI1790439, Length=526, Percent_Identity=45.8174904942966, Blast_Score=446, Evalue=1e-126, Organism=Caenorhabditis elegans, GI71985564, Length=479, Percent_Identity=35.4906054279749, Blast_Score=228, Evalue=5e-60, Organism=Caenorhabditis elegans, GI71985574, Length=307, Percent_Identity=28.6644951140065, Blast_Score=84, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71985556, Length=62, Percent_Identity=51.6129032258064, Blast_Score=78, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323768, Length=467, Percent_Identity=35.9743040685225, Blast_Score=248, Evalue=1e-66, Organism=Saccharomyces cerevisiae, GI6323056, Length=471, Percent_Identity=36.5180467091295, Blast_Score=244, Evalue=2e-65, Organism=Drosophila melanogaster, GI24649832, Length=468, Percent_Identity=33.7606837606838, Blast_Score=227, Evalue=2e-59,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 56126; Mature: 56126
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKRALISVFDKDGVLELAKFLRDRDVEIISSGGTYKYLKENNIEVKEISEITDFPEMLD CCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHCCHHHHC GRVKTLHPLVHAGILAIRDNKEHMKTLEEREINTIDYVVVNLYPFFEKVREDLSFEEKVE CHHHHHHHHHHHCEEEEECCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHHHCCC FIDIGGPTMLRAAAKNFKDVVVLSDKKDYEKVMNEIKENNCVSFKLRKTLAGKVFNLMSA EEECCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH YDAAISNFLLEGEEEYPEYLSVSYKKIQDLRYGENPHQGAAYYSSTEFDGAMNSFEILNG HHHHHHHHHHCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEECC KALSYNNIKDLDIAWKVACEFEETACCALKHNTPCGVAVGENSKEVYLKAYDADPVSIFG CEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEEECCCHHHHHC GIVAINRKIDKATAEEMVKIFLEVVAAPDFDEDALEVLRTKKNLRVIKCKNTPQAKNYMV CCEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEE TVDGGILVQGEDNKLANEYKVVTEKEPTEMELRDMIFGMKVVKYVKSNAIVVVKDGVATG EECCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEC IGGGQVNRIWATKEALERGKGGAVLASDAFFPFRDCVDEAAKNGIKAIIQPGGSIRDEES CCCCCEEEEEECHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHH IEACNEHGISMVFTGVRHFKH HHHHHHCCCHHEEHHHHHHCC >Mature Secondary Structure MKKRALISVFDKDGVLELAKFLRDRDVEIISSGGTYKYLKENNIEVKEISEITDFPEMLD CCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCHHHHHHHHCCHHHHC GRVKTLHPLVHAGILAIRDNKEHMKTLEEREINTIDYVVVNLYPFFEKVREDLSFEEKVE CHHHHHHHHHHHCEEEEECCHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHHHCCC FIDIGGPTMLRAAAKNFKDVVVLSDKKDYEKVMNEIKENNCVSFKLRKTLAGKVFNLMSA EEECCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH YDAAISNFLLEGEEEYPEYLSVSYKKIQDLRYGENPHQGAAYYSSTEFDGAMNSFEILNG HHHHHHHHHHCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCEEEECC KALSYNNIKDLDIAWKVACEFEETACCALKHNTPCGVAVGENSKEVYLKAYDADPVSIFG CEECCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCEEEEEEECCCHHHHHC GIVAINRKIDKATAEEMVKIFLEVVAAPDFDEDALEVLRTKKNLRVIKCKNTPQAKNYMV CCEEEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCEEE TVDGGILVQGEDNKLANEYKVVTEKEPTEMELRDMIFGMKVVKYVKSNAIVVVKDGVATG EECCEEEEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEC IGGGQVNRIWATKEALERGKGGAVLASDAFFPFRDCVDEAAKNGIKAIIQPGGSIRDEES CCCCCEEEEEECHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCHHH IEACNEHGISMVFTGVRHFKH HHHHHHCCCHHEEHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA