Definition Clostridium perfringens str. 13, complete genome.
Accession NC_003366
Length 3,031,430

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The map label for this gene is entD [H]

Identifier: 18309588

GI number: 18309588

Start: 758558

End: 760465

Strand: Direct

Name: entD [H]

Synonym: CPE0606

Alternate gene names: 18309588

Gene position: 758558-760465 (Clockwise)

Preceding gene: 18309586

Following gene: 18309589

Centisome position: 25.02

GC content: 31.18

Gene sequence:

>1908_bases
ATGAATAGAAGAAAAATAAGTGCTTTATTACTGTCGTGTACTTTAGCTATGAATATTTCAAGCTTTAATGAAATTGTTCT
AGCAGATGAAAATAAGGGAGAAGAAGTTCAAAAGGAAAGTCATAATGAAAGTAATTGTATAGCTGGGGATTACCATGAAG
TTAATAATGGAAATGCAAAAAATACAGAGAACACACCTGTTATAAATGGAATAAAAGTAAACAAACAATTGATAGATATA
AATTACTCTCAAGGAGTTACTATAAATCCAAAATATATAGTTATACATGATACTGATAATAGACAAGCTGGTGCTAATGC
TATGGCTAATAGAAATTACTTTGCAAATCATCCAAATGCTAAAGCATCAGCACATTATATAATTGATGAAGGCAATATTA
TTCAAGCTTTAGAAGATACTTGGAAGGGGTGGCATGTTGGAGATGGTAATAATCCCAATATAAATAATTCCACAACTATT
GCTATAGAACTATGTGTTAATAAGGAAAATGATTTTGATAAAACTTTAGAAAATGGAATTGAATTAACAAAATATCTAGT
GAATAAATACAATATACCAGCAGAAAACGTTGTTATGCATAGGGATGCAAGTGGAAAAACATGTTCAAGGATGATGATTG
AAGATAGACCAAGTTTATGGCCTTATTTTAAAGAGAGAATTTCTGGTGGAGATGGAAGCTTAGAAGATGACGGGTTAAAA
CCTAAAATGCAAGGTAAAGTTACTAATGCTTCTGTTCTTAATGTAAGAGAGAGTCCAAGCACTTCAGGAAGAATAGTTCA
CAAATTAAATAGAAATCAAGTGGTAGGAATATATGAAGAGTTAAATGGATGGTACAAAATTGACTATATAGATGGAGTTA
AAAAGAAGTATGGATATGTAAGTAAGGATTATATATCAATAATTAATGAGAATCCTGAGGACGAAGAAACTAATGGGGAT
ATTGAAATAGAAAAACCATCTGTATCAGTAAATAAACAAGGGATAGTAAAAGTAAATAGTGCCTTAAATATGAGAAGCGG
CCCAGGAAGCAATTACGGAGTAATAGGAACTTTACGTAATAATGATGAGGTAGAAATCATCAAGGAAGTAGATGGATGGT
ATGAAATAAAGTTTAATGGAAAAAGTGGATATGTATCAAGCCAATACATAAAAGTATTAGATAATGAGTCAAATGAAGAG
AAACCAGTAGAGCCAGAAAAACCATCTGTATCATTAAATAAACAAGGGGTAGTAAAGGTAAATAGTGCCTTAAATATGAG
AAGTGGCCCAGGAAGCAATTACGGAGTAATAGGAACTTTACGTAATAATGATGAGGTAGAAATCATCAAGGAAGTAGATG
GATGGTATGAAATAAAGTTTAATGGAAAAAGTGGATATGTATCAAGCCAATACATAAAAGTATTAGATAATGAGTCAAAT
GAAGAGAAACCAGTAGAGCCAGAAAAACCATCTGTATCATTAAATAAACAAGGGGTAGTAAAGGTAAATAGTGCCTTAAA
TATGAGAAGTGGCCCAGGAAGCAACTACGGAGTAATAGGAACTTTACGTAATAATGATAAGGTAGAGATAATTAAAGAAG
TAGATGGATGGTATGAAATAAGATTTAATGGTAAGGTTGGATATGCTTCAAAGTCATATATAACTATAGTCAATGAAGGA
TCTAATAATGGAACTGATAGTGTAATTAAAGAAGGAACTGTATATGGGGTAAGTACAAATCTAAATGTTAGAACTGGTCC
AGGAACTTCATATCAAGTTATTGGATACTTATTATCAGGAGATAAAGTTAAAATTTTAGGAGATGAAAATGGTTGGTATA
AGGTTCAATTTAATGCTAGTACAGGTACTAAGAATGGATATGTAAGTAAAGATTATATTAAGGTTTAA

Upstream 100 bases:

>100_bases
ATTTTATATTGAAAAATATTGAAATAGAATATAAAATAATAAGCAAATTGGGGAATTTTTAATATAGGGAAATTATGAAA
TATAGGAGAGAAAAAGACAT

Downstream 100 bases:

>100_bases
TTAGTTGTGAATATATTTAAATAGTGTAAATTTTTGAATAAAGGAAGTACTTTTTGGATAACTTTAAGATTTTGTTAATT
ATGGATTTTGTGGTAAAGTA

Product: enterotoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MNRRKISALLLSCTLAMNISSFNEIVLADENKGEEVQKESHNESNCIAGDYHEVNNGNAKNTENTPVINGIKVNKQLIDI
NYSQGVTINPKYIVIHDTDNRQAGANAMANRNYFANHPNAKASAHYIIDEGNIIQALEDTWKGWHVGDGNNPNINNSTTI
AIELCVNKENDFDKTLENGIELTKYLVNKYNIPAENVVMHRDASGKTCSRMMIEDRPSLWPYFKERISGGDGSLEDDGLK
PKMQGKVTNASVLNVRESPSTSGRIVHKLNRNQVVGIYEELNGWYKIDYIDGVKKKYGYVSKDYISIINENPEDEETNGD
IEIEKPSVSVNKQGIVKVNSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESNEE
KPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESN
EEKPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIVNEG
SNNGTDSVIKEGTVYGVSTNLNVRTGPGTSYQVIGYLLSGDKVKILGDENGWYKVQFNASTGTKNGYVSKDYIKV

Sequences:

>Translated_635_residues
MNRRKISALLLSCTLAMNISSFNEIVLADENKGEEVQKESHNESNCIAGDYHEVNNGNAKNTENTPVINGIKVNKQLIDI
NYSQGVTINPKYIVIHDTDNRQAGANAMANRNYFANHPNAKASAHYIIDEGNIIQALEDTWKGWHVGDGNNPNINNSTTI
AIELCVNKENDFDKTLENGIELTKYLVNKYNIPAENVVMHRDASGKTCSRMMIEDRPSLWPYFKERISGGDGSLEDDGLK
PKMQGKVTNASVLNVRESPSTSGRIVHKLNRNQVVGIYEELNGWYKIDYIDGVKKKYGYVSKDYISIINENPEDEETNGD
IEIEKPSVSVNKQGIVKVNSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESNEE
KPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESN
EEKPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIVNEG
SNNGTDSVIKEGTVYGVSTNLNVRTGPGTSYQVIGYLLSGDKVKILGDENGWYKVQFNASTGTKNGYVSKDYIKV
>Mature_635_residues
MNRRKISALLLSCTLAMNISSFNEIVLADENKGEEVQKESHNESNCIAGDYHEVNNGNAKNTENTPVINGIKVNKQLIDI
NYSQGVTINPKYIVIHDTDNRQAGANAMANRNYFANHPNAKASAHYIIDEGNIIQALEDTWKGWHVGDGNNPNINNSTTI
AIELCVNKENDFDKTLENGIELTKYLVNKYNIPAENVVMHRDASGKTCSRMMIEDRPSLWPYFKERISGGDGSLEDDGLK
PKMQGKVTNASVLNVRESPSTSGRIVHKLNRNQVVGIYEELNGWYKIDYIDGVKKKYGYVSKDYISIINENPEDEETNGD
IEIEKPSVSVNKQGIVKVNSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESNEE
KPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESN
EEKPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIVNEG
SNNGTDSVIKEGTVYGVSTNLNVRTGPGTSYQVIGYLLSGDKVKILGDENGWYKVQFNASTGTKNGYVSKDYIKV

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 70361; Mature: 70361

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRKISALLLSCTLAMNISSFNEIVLADENKGEEVQKESHNESNCIAGDYHEVNNGNAK
CCCHHHHHEEEEEHEEEECCCCCEEEEEECCCCCHHHHHCCCCCCCEECCCEECCCCCCC
NTENTPVINGIKVNKQLIDINYSQGVTINPKYIVIHDTDNRQAGANAMANRNYFANHPNA
CCCCCCEEEEEEECEEEEEEECCCCEEECCCEEEEECCCCCCCCCCHHCCCCCCCCCCCC
KASAHYIIDEGNIIQALEDTWKGWHVGDGNNPNINNSTTIAIELCVNKENDFDKTLENGI
CCCEEEEEECCCEEHHHHHCCCCEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHH
ELTKYLVNKYNIPAENVVMHRDASGKTCSRMMIEDRPSLWPYFKERISGGDGSLEDDGLK
HHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCC
PKMQGKVTNASVLNVRESPSTSGRIVHKLNRNQVVGIYEELNGWYKIDYIDGVKKKYGYV
CCCCCEECCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCHHHHHCCC
SKDYISIINENPEDEETNGDIEIEKPSVSVNKQGIVKVNSALNMRSGPGSNYGVIGTLRN
CCCHHHEECCCCCCCCCCCCEEEECCCCCCCCCCEEEEECEEEECCCCCCCCEEEEEECC
NDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESNEEKPVEPEKPSVSLNKQGVVKV
CCCEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEE
NSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESN
ECEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCC
EEKPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEI
CCCCCCCCCCCEEECCCCEEEEECEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
RFNGKVGYASKSYITIVNEGSNNGTDSVIKEGTVYGVSTNLNVRTGPGTSYQVIGYLLSG
EECCEECCCCCCEEEEEECCCCCCCHHHHCCCEEEEEEECEEEEECCCCCEEEEEEEECC
DKVKILGDENGWYKVQFNASTGTKNGYVSKDYIKV
CEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEC
>Mature Secondary Structure
MNRRKISALLLSCTLAMNISSFNEIVLADENKGEEVQKESHNESNCIAGDYHEVNNGNAK
CCCHHHHHEEEEEHEEEECCCCCEEEEEECCCCCHHHHHCCCCCCCEECCCEECCCCCCC
NTENTPVINGIKVNKQLIDINYSQGVTINPKYIVIHDTDNRQAGANAMANRNYFANHPNA
CCCCCCEEEEEEECEEEEEEECCCCEEECCCEEEEECCCCCCCCCCHHCCCCCCCCCCCC
KASAHYIIDEGNIIQALEDTWKGWHVGDGNNPNINNSTTIAIELCVNKENDFDKTLENGI
CCCEEEEEECCCEEHHHHHCCCCEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHH
ELTKYLVNKYNIPAENVVMHRDASGKTCSRMMIEDRPSLWPYFKERISGGDGSLEDDGLK
HHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCC
PKMQGKVTNASVLNVRESPSTSGRIVHKLNRNQVVGIYEELNGWYKIDYIDGVKKKYGYV
CCCCCEECCEEEEEEECCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCHHHHHCCC
SKDYISIINENPEDEETNGDIEIEKPSVSVNKQGIVKVNSALNMRSGPGSNYGVIGTLRN
CCCHHHEECCCCCCCCCCCCEEEECCCCCCCCCCEEEEECEEEECCCCCCCCEEEEEECC
NDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESNEEKPVEPEKPSVSLNKQGVVKV
CCCEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEE
NSALNMRSGPGSNYGVIGTLRNNDEVEIIKEVDGWYEIKFNGKSGYVSSQYIKVLDNESN
ECEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCCC
EEKPVEPEKPSVSLNKQGVVKVNSALNMRSGPGSNYGVIGTLRNNDKVEIIKEVDGWYEI
CCCCCCCCCCCEEECCCCEEEEECEEEECCCCCCCCEEEEEECCCCCEEEEEECCCEEEE
RFNGKVGYASKSYITIVNEGSNNGTDSVIKEGTVYGVSTNLNVRTGPGTSYQVIGYLLSG
EECCEECCCCCCEEEEEECCCCCCCHHHHCCCEEEEEEECEEEEECCCCCEEEEEEEECC
DKVKILGDENGWYKVQFNASTGTKNGYVSKDYIKV
CEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]