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The map label for this gene is yggW [H]

Identifier: 182681313

GI number: 182681313

Start: 896620

End: 897771

Strand: Direct

Name: yggW [H]

Synonym: XfasM23_0760

Alternate gene names: 182681313

Gene position: 896620-897771 (Clockwise)

Preceding gene: 182681312

Following gene: 182681314

Centisome position: 35.36

GC content: 53.47

Gene sequence:

>1152_bases
ATGTTGATCCCGCCGCCACTTTCGCTATATGTGCATTTGCCTTGGTGCGTGCGTAAGTGCCCGTACTGTGATTTCAACTC
TCACCAAGCCAAGGGTGCACTCCCGTTCGATGCTTATGTCAACGCATTACTGCGTGACCTGGAGTACGACTTACCTTTGG
TGTGGGGCCGTGTTGTGCACAGTGTGTTCTTGGGTGGCGGCACGCCCAGCCTATTCCCCCCGGAAGCGATTGACCGTTTT
TTGCAGATCGTTGCGGCGCGGCTGCGTCTTGCTCCGGATGCTGAAATCACCCTGGAAACCAATCCGGGGACTGCCGAGTA
TGGTCGTTTTGATCGTTATCTTGCCGCTGGCATCAATCGGCTGAGCTTTGGTATCCAAAGTTTTAATGATGCTGCACTGC
GGCGATTGGGGCGGATTCATGACAGCCTCCAGGCTGAGCAGGCTGTGAAACTGGCACAAGATGCCGGGTTCACTAACATC
AACCTGGATCTAATGTATGCGCTGCCAGAGCAAACCTTGCTTGAAGCCGAGCACGACTTACAGCGTGCATTTGCCCTGGC
GCCTACCCATCTTTCCTATTATCAGCTCACCCTTGAACCCAATACCGTCTTCTACGCCCGCCCGCCGCAGGGCATTCCCG
ATGACGATGCCGCGTGGGAGATGCAGGAGCATACCCAACGCCTGCTTGCTGAGGCTGGTTACCAGCATTACGAGGTCAGC
GCTTACGCCCGTGAGGGCTGGCAGTGCCTGCATAATCTGAACTATTGGCGCTTTGGAGACTACCTTGGTATCGGTGCCGG
GGCACATGGCAAGATCACTTCCGGAGTGTCACAGCATGTGTTGCGCCGCTGGAAATGTAAGCATCCGTACACCTACTTGG
ACAACGCTGGTACCGTCTCTGCGATCGGTGGTGATGAGATTGTGCCAACGGCACGCTTGCCATTTGAATATATGCTCAAT
CTATTACGCCTGCGCGAAGGATTCCGATTACAGGATTTTGCTGTACGTACAGGACTGACCGTTGAATCAATCCATGCAGC
ATTGAGAGAGGCTGTTGCACGCGGTTGGTTACGATGTGAACTTGAACACGTCATCCCGACTGAATTAGGGTTGCGTTTTG
CTAACGATGTCATCAACTTATTCAATGAATAA

Upstream 100 bases:

>100_bases
TCCTGTCACTCGGTGTTACGCGCGGTGAACATGATTAAACCTTTAGCCCACTTTTTTGGGGTGTTTGTTTCGTTTCCTTA
TCGCCATTCTATTGTTGCCC

Downstream 100 bases:

>100_bases
GCGGTGCATGGCCTCTTTGCCAGAAACGTGCTAGAAATGTGCGGTTTATCAAAGTATTGATTACATCGGATGTTTGCGGA
ACCGCTCGGCAAAACTTCCA

Product: coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MLIPPPLSLYVHLPWCVRKCPYCDFNSHQAKGALPFDAYVNALLRDLEYDLPLVWGRVVHSVFLGGGTPSLFPPEAIDRF
LQIVAARLRLAPDAEITLETNPGTAEYGRFDRYLAAGINRLSFGIQSFNDAALRRLGRIHDSLQAEQAVKLAQDAGFTNI
NLDLMYALPEQTLLEAEHDLQRAFALAPTHLSYYQLTLEPNTVFYARPPQGIPDDDAAWEMQEHTQRLLAEAGYQHYEVS
AYAREGWQCLHNLNYWRFGDYLGIGAGAHGKITSGVSQHVLRRWKCKHPYTYLDNAGTVSAIGGDEIVPTARLPFEYMLN
LLRLREGFRLQDFAVRTGLTVESIHAALREAVARGWLRCELEHVIPTELGLRFANDVINLFNE

Sequences:

>Translated_383_residues
MLIPPPLSLYVHLPWCVRKCPYCDFNSHQAKGALPFDAYVNALLRDLEYDLPLVWGRVVHSVFLGGGTPSLFPPEAIDRF
LQIVAARLRLAPDAEITLETNPGTAEYGRFDRYLAAGINRLSFGIQSFNDAALRRLGRIHDSLQAEQAVKLAQDAGFTNI
NLDLMYALPEQTLLEAEHDLQRAFALAPTHLSYYQLTLEPNTVFYARPPQGIPDDDAAWEMQEHTQRLLAEAGYQHYEVS
AYAREGWQCLHNLNYWRFGDYLGIGAGAHGKITSGVSQHVLRRWKCKHPYTYLDNAGTVSAIGGDEIVPTARLPFEYMLN
LLRLREGFRLQDFAVRTGLTVESIHAALREAVARGWLRCELEHVIPTELGLRFANDVINLFNE
>Mature_383_residues
MLIPPPLSLYVHLPWCVRKCPYCDFNSHQAKGALPFDAYVNALLRDLEYDLPLVWGRVVHSVFLGGGTPSLFPPEAIDRF
LQIVAARLRLAPDAEITLETNPGTAEYGRFDRYLAAGINRLSFGIQSFNDAALRRLGRIHDSLQAEQAVKLAQDAGFTNI
NLDLMYALPEQTLLEAEHDLQRAFALAPTHLSYYQLTLEPNTVFYARPPQGIPDDDAAWEMQEHTQRLLAEAGYQHYEVS
AYAREGWQCLHNLNYWRFGDYLGIGAGAHGKITSGVSQHVLRRWKCKHPYTYLDNAGTVSAIGGDEIVPTARLPFEYMLN
LLRLREGFRLQDFAVRTGLTVESIHAALREAVARGWLRCELEHVIPTELGLRFANDVINLFNE

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=277, Percent_Identity=39.7111913357401, Blast_Score=187, Evalue=2e-47,
Organism=Escherichia coli, GI1789325, Length=381, Percent_Identity=50.3937007874016, Blast_Score=370, Evalue=1e-104,
Organism=Escherichia coli, GI87082341, Length=308, Percent_Identity=30.8441558441558, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 43249; Mature: 43249

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIPPPLSLYVHLPWCVRKCPYCDFNSHQAKGALPFDAYVNALLRDLEYDLPLVWGRVVH
CCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
SVFLGGGTPSLFPPEAIDRFLQIVAARLRLAPDAEITLETNPGTAEYGRFDRYLAAGINR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
LSFGIQSFNDAALRRLGRIHDSLQAEQAVKLAQDAGFTNINLDLMYALPEQTLLEAEHDL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHH
QRAFALAPTHLSYYQLTLEPNTVFYARPPQGIPDDDAAWEMQEHTQRLLAEAGYQHYEVS
HHHHHHCCCCCEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHH
AYAREGWQCLHNLNYWRFGDYLGIGAGAHGKITSGVSQHVLRRWKCKHPYTYLDNAGTVS
HHHHHHHHHHHCCCCEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEE
AIGGDEIVPTARLPFEYMLNLLRLREGFRLQDFAVRTGLTVESIHAALREAVARGWLRCE
ECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHEEE
LEHVIPTELGLRFANDVINLFNE
HHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIPPPLSLYVHLPWCVRKCPYCDFNSHQAKGALPFDAYVNALLRDLEYDLPLVWGRVVH
CCCCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
SVFLGGGTPSLFPPEAIDRFLQIVAARLRLAPDAEITLETNPGTAEYGRFDRYLAAGINR
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
LSFGIQSFNDAALRRLGRIHDSLQAEQAVKLAQDAGFTNINLDLMYALPEQTLLEAEHDL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHHHH
QRAFALAPTHLSYYQLTLEPNTVFYARPPQGIPDDDAAWEMQEHTQRLLAEAGYQHYEVS
HHHHHHCCCCCEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHH
AYAREGWQCLHNLNYWRFGDYLGIGAGAHGKITSGVSQHVLRRWKCKHPYTYLDNAGTVS
HHHHHHHHHHHCCCCEEECCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEE
AIGGDEIVPTARLPFEYMLNLLRLREGFRLQDFAVRTGLTVESIHAALREAVARGWLRCE
ECCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHEEE
LEHVIPTELGLRFANDVINLFNE
HHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]