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The map label for this gene is yncD [C]

Identifier: 182681301

GI number: 182681301

Start: 881279

End: 883330

Strand: Direct

Name: yncD [C]

Synonym: XfasM23_0747

Alternate gene names: 182681301

Gene position: 881279-883330 (Clockwise)

Preceding gene: 182681298

Following gene: 182681306

Centisome position: 34.75

GC content: 52.05

Gene sequence:

>2052_bases
ATGCCGTCATTCCGCTTCTTTTTCTCGGCGTCGCTGTTTAGTCTTATTTTATGTAGTGTCGTTTTCGGCGTTGATGCCAC
TGCTGTTACTACCAGTACGGATCATTCTCTACCGTTGAGCCTCGGTAAAATTCAAGTTGAGGGGACTCATGACGGCGCCA
CGTTAGTGGATAGCAAGCTTGGTTCTGTCGATGTCCTGAGCGATGACCTGCTGCAAGGCCAGCATGTCGATTACACCTGG
GAAGTATTCATGCGCGCACAGGGTGTGCAGGTGACGCAGTTTAAAATGGGTACTGAGTCTGGTCGTATCTCCTTCAGGGG
ATTCAATGGCGAAGGCCGTATTAACGCGATTAAATTGCTCATTGATGGTATCCCCAGTAACGACAATGCGGGGGGGATGC
CTTACCTTGATGCGATCTCCCCTTTGGGGATGAGCGCGATTGAGATTGTGCGTGGTACGAATGATCCGCGCTATGGCCTC
AACGCGATCGCAGGCCATGTCGACGTGATTACCCGCAGTGGTGGCAACGATGGTTTGCTCAGTGTGACTACCGGTGACTT
CGGCACTCGCAAGATTCAGTGGGTCAAAGGCATTGAGCGTGCCGCGTGGAGTCAGAACTACGTTGTAAGTTGGCTTGATT
CGGATGGATACCGGGATCATGCGCGTGCAATCAAACGTGCTGTCTCTGGCAAATGGGGATATGCCGATCCTAGAGATGCG
TGGCGTGCTGGTTTGAGTGTGCGCTACTTTCATAATGATGCTCAGGAGCCCGGATACCTGACTTATGATGCTGCTGTCGC
CGATCCGCGTAGTTCGCCAGCGTATTCTGGACAGGACCACAGCCAACGCCAAACCGTACAGACTGCTTTGCACTTGGATG
GGAGGATGAGTGAAGCATTCCATTGGACTGCTAAGTCTTATATCAACCGCTATACCAATGATCGTGTGGTGAAGTTCACT
GCTGCCAGCGCACGTCAGGAGCGCTACACCGATGAAACCCATCGTGGCGTGTTGACCAATGCGATCTGGCGACCTTCGGT
AGATTGGGCGTATGAATTTTCCATTGAAGGCGGTGTTGATGCGCAATGGCAGAGCAACGTGTCACGTCGCTATCGCATGT
TGGATGGTCAGCGCGGCACTGTGCTGCGTGACTGGGATTTCGATCTGGATACGTACGGCGCTTATTTACAATCAATGATC
CGCGTCAACGATTCCCTGAAGTTGGTTTCAGCCTACCGTGTCGATCGTATTGATGGTCGGTTTATTGACATCGCTAGTGG
GCTGCGCTATCCGGTGTACCGATACGGCACGATCCAACAGCCGAAGTTCAGTGTGTCTTATGACGTGAGTCAGGATGTGA
CTGTCTATGCCAACTGGGGGCGTACTTTCCAGATTGGTAGTGGTAATGGTGCCTATCGCACTCAAGCTGATGATCTGGCG
CCGTCGATGAATGATGGTTGGGAAACTGGATTGACTTTCAAGCCGTGGTCTTGGGCTAATGCGCGCTTGGTGTACTGGCA
GCAGCGTGCTTCCGGTGAGGTGGCCACTCTCTTAGGTACGAATGGCGCTATTGCCATTAACGAGGTTGGTAATCTTGGCA
AGACGTTACGCAACGGCTGGGATGCGCAGCTTAACTTGCAGCCGGACGAGCAGTGGCGTGTATGGCTGGGCTATTCCCGT
CAGGAAGCTGAGATTGCTATTCCAGATCCGAGTGTGCCTGCCACGCGTGGTAAACAGATCGAAAATGTGCCGCGTTGGCT
TACCAATGTTGGAGCGGAGTGGCAGGTGCTACCCAAGCTCAAGCTCAGTGCTTGGGGGAATGGTCAGGGAAACTATTATG
TTGAGCGCACTAACACACTGGGACGTTATGGCCGTTATTTTCTTAGCAATCTTAGTGCCACTTGGTTGCTTTCGAACAAG
AGTGAATTGACATTGCAACTGAATAATGTGACCAATCGTTTCTACGTCTATGCCTGGTATGACAGCGGTCTTTCCGGCTA
TTCACCTGGTGACGGCCGTGCACTTTATCTGACCTGGAATCTGACCTTTTGA

Upstream 100 bases:

>100_bases
GAACCCAAATTTTCATCTGTTACTAGACTGCTAACGTACGTTGTTAGTGATTGGTTTTTTATTGTTATCCCTGTTCGGAT
CTGGTTGGAGCATCTCTTTC

Downstream 100 bases:

>100_bases
TAGCCGTCGTTGCTGAGGGCGACGCTGAAGATCGACATTTTTTATGCAAGTTTAAGTGTGTTGATAGCACCTGTTCTGGA
ATGTGGCCCATGGAGTGATT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Domain Protein; NB Dependent Receptor; NB-Dependent Outer Membrane Receptor; NB-Receptor Protein; Outer Membrane Receptor Protein; NB-Dependent Receptor YncD; NB-Dependent Receptor Plug Domain-Containing; Nb-Dependent Receptor; NB-Dependent Receptor Domain-Containing Protein; NB-Dependent Siderophore Receptor; NB-Dependent Receptor For Iron Transport; NB-Dependent Siderophore Receptor Protein

Number of amino acids: Translated: 683; Mature: 682

Protein sequence:

>683_residues
MPSFRFFFSASLFSLILCSVVFGVDATAVTTSTDHSLPLSLGKIQVEGTHDGATLVDSKLGSVDVLSDDLLQGQHVDYTW
EVFMRAQGVQVTQFKMGTESGRISFRGFNGEGRINAIKLLIDGIPSNDNAGGMPYLDAISPLGMSAIEIVRGTNDPRYGL
NAIAGHVDVITRSGGNDGLLSVTTGDFGTRKIQWVKGIERAAWSQNYVVSWLDSDGYRDHARAIKRAVSGKWGYADPRDA
WRAGLSVRYFHNDAQEPGYLTYDAAVADPRSSPAYSGQDHSQRQTVQTALHLDGRMSEAFHWTAKSYINRYTNDRVVKFT
AASARQERYTDETHRGVLTNAIWRPSVDWAYEFSIEGGVDAQWQSNVSRRYRMLDGQRGTVLRDWDFDLDTYGAYLQSMI
RVNDSLKLVSAYRVDRIDGRFIDIASGLRYPVYRYGTIQQPKFSVSYDVSQDVTVYANWGRTFQIGSGNGAYRTQADDLA
PSMNDGWETGLTFKPWSWANARLVYWQQRASGEVATLLGTNGAIAINEVGNLGKTLRNGWDAQLNLQPDEQWRVWLGYSR
QEAEIAIPDPSVPATRGKQIENVPRWLTNVGAEWQVLPKLKLSAWGNGQGNYYVERTNTLGRYGRYFLSNLSATWLLSNK
SELTLQLNNVTNRFYVYAWYDSGLSGYSPGDGRALYLTWNLTF

Sequences:

>Translated_683_residues
MPSFRFFFSASLFSLILCSVVFGVDATAVTTSTDHSLPLSLGKIQVEGTHDGATLVDSKLGSVDVLSDDLLQGQHVDYTW
EVFMRAQGVQVTQFKMGTESGRISFRGFNGEGRINAIKLLIDGIPSNDNAGGMPYLDAISPLGMSAIEIVRGTNDPRYGL
NAIAGHVDVITRSGGNDGLLSVTTGDFGTRKIQWVKGIERAAWSQNYVVSWLDSDGYRDHARAIKRAVSGKWGYADPRDA
WRAGLSVRYFHNDAQEPGYLTYDAAVADPRSSPAYSGQDHSQRQTVQTALHLDGRMSEAFHWTAKSYINRYTNDRVVKFT
AASARQERYTDETHRGVLTNAIWRPSVDWAYEFSIEGGVDAQWQSNVSRRYRMLDGQRGTVLRDWDFDLDTYGAYLQSMI
RVNDSLKLVSAYRVDRIDGRFIDIASGLRYPVYRYGTIQQPKFSVSYDVSQDVTVYANWGRTFQIGSGNGAYRTQADDLA
PSMNDGWETGLTFKPWSWANARLVYWQQRASGEVATLLGTNGAIAINEVGNLGKTLRNGWDAQLNLQPDEQWRVWLGYSR
QEAEIAIPDPSVPATRGKQIENVPRWLTNVGAEWQVLPKLKLSAWGNGQGNYYVERTNTLGRYGRYFLSNLSATWLLSNK
SELTLQLNNVTNRFYVYAWYDSGLSGYSPGDGRALYLTWNLTF
>Mature_682_residues
PSFRFFFSASLFSLILCSVVFGVDATAVTTSTDHSLPLSLGKIQVEGTHDGATLVDSKLGSVDVLSDDLLQGQHVDYTWE
VFMRAQGVQVTQFKMGTESGRISFRGFNGEGRINAIKLLIDGIPSNDNAGGMPYLDAISPLGMSAIEIVRGTNDPRYGLN
AIAGHVDVITRSGGNDGLLSVTTGDFGTRKIQWVKGIERAAWSQNYVVSWLDSDGYRDHARAIKRAVSGKWGYADPRDAW
RAGLSVRYFHNDAQEPGYLTYDAAVADPRSSPAYSGQDHSQRQTVQTALHLDGRMSEAFHWTAKSYINRYTNDRVVKFTA
ASARQERYTDETHRGVLTNAIWRPSVDWAYEFSIEGGVDAQWQSNVSRRYRMLDGQRGTVLRDWDFDLDTYGAYLQSMIR
VNDSLKLVSAYRVDRIDGRFIDIASGLRYPVYRYGTIQQPKFSVSYDVSQDVTVYANWGRTFQIGSGNGAYRTQADDLAP
SMNDGWETGLTFKPWSWANARLVYWQQRASGEVATLLGTNGAIAINEVGNLGKTLRNGWDAQLNLQPDEQWRVWLGYSRQ
EAEIAIPDPSVPATRGKQIENVPRWLTNVGAEWQVLPKLKLSAWGNGQGNYYVERTNTLGRYGRYFLSNLSATWLLSNKS
ELTLQLNNVTNRFYVYAWYDSGLSGYSPGDGRALYLTWNLTF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76495; Mature: 76364

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSFRFFFSASLFSLILCSVVFGVDATAVTTSTDHSLPLSLGKIQVEGTHDGATLVDSKL
CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECEEEEEECCCCCEEHHCCC
GSVDVLSDDLLQGQHVDYTWEVFMRAQGVQVTQFKMGTESGRISFRGFNGEGRINAIKLL
CCEEECCHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEE
IDGIPSNDNAGGMPYLDAISPLGMSAIEIVRGTNDPRYGLNAIAGHVDVITRSGGNDGLL
EECCCCCCCCCCCCHHHHCCCCCCCHHHHEECCCCCCCCHHHHCCEEEEEEECCCCCCEE
SVTTGDFGTRKIQWVKGIERAAWSQNYVVSWLDSDGYRDHARAIKRAVSGKWGYADPRDA
EEEECCCCCEEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHH
WRAGLSVRYFHNDAQEPGYLTYDAAVADPRSSPAYSGQDHSQRQTVQTALHLDGRMSEAF
HHHCCEEEEEECCCCCCCEEEEECEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
HWTAKSYINRYTNDRVVKFTAASARQERYTDETHRGVLTNAIWRPSVDWAYEFSIEGGVD
HHHHHHHHHHCCCCEEEEEEECHHHHHHCCCHHHCCHHHHCEECCCCCEEEEEEECCCCC
AQWQSNVSRRYRMLDGQRGTVLRDWDFDLDTYGAYLQSMIRVNDSLKLVSAYRVDRIDGR
CHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCC
FIDIASGLRYPVYRYGTIQQPKFSVSYDVSQDVTVYANWGRTFQIGSGNGAYRTQADDLA
EEEECCCCCCCEEECCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCCHHHCC
PSMNDGWETGLTFKPWSWANARLVYWQQRASGEVATLLGTNGAIAINEVGNLGKTLRNGW
CCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCEEEEEECCCCEEECCHHHHHHHHHCCC
DAQLNLQPDEQWRVWLGYSRQEAEIAIPDPSVPATRGKQIENVPRWLTNVGAEWQVLPKL
CCEEECCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECEE
KLSAWGNGQGNYYVERTNTLGRYGRYFLSNLSATWLLSNKSELTLQLNNVTNRFYVYAWY
EEEECCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCEEEEEEEE
DSGLSGYSPGDGRALYLTWNLTF
ECCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
PSFRFFFSASLFSLILCSVVFGVDATAVTTSTDHSLPLSLGKIQVEGTHDGATLVDSKL
CCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECEEEEEECCCCCEEHHCCC
GSVDVLSDDLLQGQHVDYTWEVFMRAQGVQVTQFKMGTESGRISFRGFNGEGRINAIKLL
CCEEECCHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEE
IDGIPSNDNAGGMPYLDAISPLGMSAIEIVRGTNDPRYGLNAIAGHVDVITRSGGNDGLL
EECCCCCCCCCCCCHHHHCCCCCCCHHHHEECCCCCCCCHHHHCCEEEEEEECCCCCCEE
SVTTGDFGTRKIQWVKGIERAAWSQNYVVSWLDSDGYRDHARAIKRAVSGKWGYADPRDA
EEEECCCCCEEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHH
WRAGLSVRYFHNDAQEPGYLTYDAAVADPRSSPAYSGQDHSQRQTVQTALHLDGRMSEAF
HHHCCEEEEEECCCCCCCEEEEECEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
HWTAKSYINRYTNDRVVKFTAASARQERYTDETHRGVLTNAIWRPSVDWAYEFSIEGGVD
HHHHHHHHHHCCCCEEEEEEECHHHHHHCCCHHHCCHHHHCEECCCCCEEEEEEECCCCC
AQWQSNVSRRYRMLDGQRGTVLRDWDFDLDTYGAYLQSMIRVNDSLKLVSAYRVDRIDGR
CHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCC
FIDIASGLRYPVYRYGTIQQPKFSVSYDVSQDVTVYANWGRTFQIGSGNGAYRTQADDLA
EEEECCCCCCCEEECCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCCCCCCCHHHCC
PSMNDGWETGLTFKPWSWANARLVYWQQRASGEVATLLGTNGAIAINEVGNLGKTLRNGW
CCCCCCCCCCCEECCCCCCCCEEEEEEECCCCCEEEEEECCCCEEECCHHHHHHHHHCCC
DAQLNLQPDEQWRVWLGYSRQEAEIAIPDPSVPATRGKQIENVPRWLTNVGAEWQVLPKL
CCEEECCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECEE
KLSAWGNGQGNYYVERTNTLGRYGRYFLSNLSATWLLSNKSELTLQLNNVTNRFYVYAWY
EEEECCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCEEEEEEEE
DSGLSGYSPGDGRALYLTWNLTF
ECCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA