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The map label for this gene is 182680557

Identifier: 182680557

GI number: 182680557

Start: 4153056

End: 4153685

Strand: Reverse

Name: 182680557

Synonym: Bind_3662

Alternate gene names: NA

Gene position: 4153685-4153056 (Counterclockwise)

Preceding gene: 182680560

Following gene: 182680554

Centisome position: 99.61

GC content: 58.73

Gene sequence:

>630_bases
ATGGCCCCGCTCTCCAAGTCTCCTCCGCCCAGCGGTCTTCTCATCACGGCTTTCGCGGTGATCCTCGCGGTCCTCGCCGC
CACAGTCTTGCTCGTTCTGCCGGGGCATGACCCTCTCGGCATTGATTCAAAAATCCGTGAGTCACAACCTGCAGGCCCTC
GGATTGGTGGCCCCTTCGTGTTGGAAGCCACTGACGGCCGAACCATAAGCGACAAGGATTTGCTCGGCAGACCCTATCTT
CTCTTCTTCGGTTATACGCATTGCCCGGATTTCTGCCCGACGGCACTCGCCGACATGAGTGCCGTCTTCAAGGCAATGGG
TGAGAAGGCGCCGGTCACAGGGGTCTTCATCACGCTCGACCCGGAACGCGACACGCCGGCGGTCCTCCGTGACTATCTGT
CGAGTTTCGATCCGCGGATCATCGGCCTGACAGGCGAGAAGGACAAGATCAACGCGGTCGCCAAGGCCTTTCGCGTCTAT
AGCCGGCAAATCCCCGGCCCCAATGGCGATTATACGCTCGACCATACGGGGCTCGTCTATTTGATGGACCGCCGAGGCCA
GTTCATCAATGCCTTTAATCTCGGACAAGATCCGCGCGCGGCGGCGGAGGAATTAAAGAAATATTTTTGA

Upstream 100 bases:

>100_bases
ATTGATCCAAAAAGTGGATCCTCTTTCGGGTCTAAGGCTCTAAACTTGCGCAAGGACATTTGTCTGGAACCCGCTTGAAA
TTTCTCGTAGGAAGCCGCCC

Downstream 100 bases:

>100_bases
AATCAATTCTCCAATAAAAACGGCCCCGAGGATTGAACTCCCTCGGGGCCGTTTTTCTTTGCTCTCGAGGATCAGAAGAA
GAAAGTCGTGCCGATCACGA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAPLSKSPPPSGLLITAFAVILAVLAATVLLVLPGHDPLGIDSKIRESQPAGPRIGGPFVLEATDGRTISDKDLLGRPYL
LFFGYTHCPDFCPTALADMSAVFKAMGEKAPVTGVFITLDPERDTPAVLRDYLSSFDPRIIGLTGEKDKINAVAKAFRVY
SRQIPGPNGDYTLDHTGLVYLMDRRGQFINAFNLGQDPRAAAEELKKYF

Sequences:

>Translated_209_residues
MAPLSKSPPPSGLLITAFAVILAVLAATVLLVLPGHDPLGIDSKIRESQPAGPRIGGPFVLEATDGRTISDKDLLGRPYL
LFFGYTHCPDFCPTALADMSAVFKAMGEKAPVTGVFITLDPERDTPAVLRDYLSSFDPRIIGLTGEKDKINAVAKAFRVY
SRQIPGPNGDYTLDHTGLVYLMDRRGQFINAFNLGQDPRAAAEELKKYF
>Mature_208_residues
APLSKSPPPSGLLITAFAVILAVLAATVLLVLPGHDPLGIDSKIRESQPAGPRIGGPFVLEATDGRTISDKDLLGRPYLL
FFGYTHCPDFCPTALADMSAVFKAMGEKAPVTGVFITLDPERDTPAVLRDYLSSFDPRIIGLTGEKDKINAVAKAFRVYS
RQIPGPNGDYTLDHTGLVYLMDRRGQFINAFNLGQDPRAAAEELKKYF

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=160, Percent_Identity=40, Blast_Score=125, Evalue=3e-29,
Organism=Homo sapiens, GI281182727, Length=157, Percent_Identity=31.8471337579618, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI281182722, Length=157, Percent_Identity=31.8471337579618, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI281182716, Length=157, Percent_Identity=31.8471337579618, Blast_Score=100, Evalue=6e-22,
Organism=Homo sapiens, GI153791313, Length=157, Percent_Identity=31.8471337579618, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17531419, Length=164, Percent_Identity=39.6341463414634, Blast_Score=129, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6319511, Length=194, Percent_Identity=36.5979381443299, Blast_Score=130, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6319498, Length=158, Percent_Identity=39.2405063291139, Blast_Score=127, Evalue=2e-30,
Organism=Drosophila melanogaster, GI19920710, Length=159, Percent_Identity=40.251572327044, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22651; Mature: 22520

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPLSKSPPPSGLLITAFAVILAVLAATVLLVLPGHDPLGIDSKIRESQPAGPRIGGPFV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCCCCCCEE
LEATDGRTISDKDLLGRPYLLFFGYTHCPDFCPTALADMSAVFKAMGEKAPVTGVFITLD
EEECCCCEECCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PERDTPAVLRDYLSSFDPRIIGLTGEKDKINAVAKAFRVYSRQIPGPNGDYTLDHTGLVY
CCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEE
LMDRRGQFINAFNLGQDPRAAAEELKKYF
EEECCCCEEEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
APLSKSPPPSGLLITAFAVILAVLAATVLLVLPGHDPLGIDSKIRESQPAGPRIGGPFV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHCCCCCCCCCCCCEE
LEATDGRTISDKDLLGRPYLLFFGYTHCPDFCPTALADMSAVFKAMGEKAPVTGVFITLD
EEECCCCEECCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PERDTPAVLRDYLSSFDPRIIGLTGEKDKINAVAKAFRVYSRQIPGPNGDYTLDHTGLVY
CCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEE
LMDRRGQFINAFNLGQDPRAAAEELKKYF
EEECCCCEEEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA