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The map label for this gene is dgoR [H]

Identifier: 182679986

GI number: 182679986

Start: 3520444

End: 3521169

Strand: Reverse

Name: dgoR [H]

Synonym: Bind_3082

Alternate gene names: 182679986

Gene position: 3521169-3520444 (Counterclockwise)

Preceding gene: 182679987

Following gene: 182679985

Centisome position: 84.44

GC content: 61.16

Gene sequence:

>726_bases
ATGACGTCCCCGCTCGTTGTCATTCCCAGTCGCAGAACCAACTCCAATAATGCGGAAGTGGCACGCATCATCGGCATCGA
CATCATTGCCAGCCGTTACAAGGAAGGCGCCAAACTGCCCGGAGACGCCGAACTCACCATGCTGTTCGGCATATCGCGTC
CGGTCCTGCGCGAGAGTGTAAAAACCCTCGTCGCCAAGGGGCTGCTCAGCACGAAGGCCCGGGTGGGCACGGTGGTGCGT
GAACGCGCCGCCTGGAACATGTTCGATCCTGACGTGCTGGCCTGGCATCTCGATGCCGGCATCGACGCCCGCTTCCTGCG
CGATCTCTCCGAAATCCGGCTCGCTGTCGAGCCACGGGCGGCTGCTTTGGCCGCTGAGCGGCGGACCGACCAAGACATCG
CCCTGATGCGCGCAATCATCACCAACATGTATGCAGCTGCTTCACGAGGGGCGGAAAATTTCGCGGAAGCAGATCTCGGT
TTTCATCTTCTCATTGCGAATGCCTCCGGCAATCCGTTCATGCGCTCCATCGGTGCGGTCATCGAGGCGGCCTTGCGCGT
GTCCTTTCGTCTCAGCGCTCCCCGCGATGAACGCGAATTTGAAATCTCCGTCGCCGCCCATGAGCGCATCGTCGACGCCA
TCGCTGAAAAGAATTCCGAGTCGGCAGCGGCTGCGATGACCAATGTCATTTTCTCAGGCCAGCGCCGCCACCGGGCAGCG
GACTGA

Upstream 100 bases:

>100_bases
CGAGAGCGGGAGATGTGCCGCTTGCCACGACATCGCCTTCCAAAAGGCCAGGCTCGACCTCGAGGCGATCAGACATCCGT
TCCGCAGGAGTTACAATATC

Downstream 100 bases:

>100_bases
AGCAAACGGAAACAACATGAAAGACGACATTCCCCACAAGCCTCTGCGCAGTCAGGCCTGGTTCGGTCGGCAGGATAAAA
TGGGCTTCTATTACCGCTCC

Product: GntR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTSPLVVIPSRRTNSNNAEVARIIGIDIIASRYKEGAKLPGDAELTMLFGISRPVLRESVKTLVAKGLLSTKARVGTVVR
ERAAWNMFDPDVLAWHLDAGIDARFLRDLSEIRLAVEPRAAALAAERRTDQDIALMRAIITNMYAAASRGAENFAEADLG
FHLLIANASGNPFMRSIGAVIEAALRVSFRLSAPRDEREFEISVAAHERIVDAIAEKNSESAAAAMTNVIFSGQRRHRAA
D

Sequences:

>Translated_241_residues
MTSPLVVIPSRRTNSNNAEVARIIGIDIIASRYKEGAKLPGDAELTMLFGISRPVLRESVKTLVAKGLLSTKARVGTVVR
ERAAWNMFDPDVLAWHLDAGIDARFLRDLSEIRLAVEPRAAALAAERRTDQDIALMRAIITNMYAAASRGAENFAEADLG
FHLLIANASGNPFMRSIGAVIEAALRVSFRLSAPRDEREFEISVAAHERIVDAIAEKNSESAAAAMTNVIFSGQRRHRAA
D
>Mature_240_residues
TSPLVVIPSRRTNSNNAEVARIIGIDIIASRYKEGAKLPGDAELTMLFGISRPVLRESVKTLVAKGLLSTKARVGTVVRE
RAAWNMFDPDVLAWHLDAGIDARFLRDLSEIRLAVEPRAAALAAERRTDQDIALMRAIITNMYAAASRGAENFAEADLGF
HLLIANASGNPFMRSIGAVIEAALRVSFRLSAPRDEREFEISVAAHERIVDAIAEKNSESAAAAMTNVIFSGQRRHRAAD

Specific function: Repressor for the dgoRKAT operon. Binds D-galactonate as an inducer [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994955, Length=213, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI48994961, Length=199, Percent_Identity=31.6582914572864, Blast_Score=103, Evalue=8e-24,
Organism=Escherichia coli, GI1786303, Length=215, Percent_Identity=32.093023255814, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790032, Length=233, Percent_Identity=30.4721030042918, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26263; Mature: 26132

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPLVVIPSRRTNSNNAEVARIIGIDIIASRYKEGAKLPGDAELTMLFGISRPVLRESV
CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
KTLVAKGLLSTKARVGTVVRERAAWNMFDPDVLAWHLDAGIDARFLRDLSEIRLAVEPRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHH
AALAAERRTDQDIALMRAIITNMYAAASRGAENFAEADLGFHLLIANASGNPFMRSIGAV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
IEAALRVSFRLSAPRDEREFEISVAAHERIVDAIAEKNSESAAAAMTNVIFSGQRRHRAA
HHHHHHHEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC
D
C
>Mature Secondary Structure 
TSPLVVIPSRRTNSNNAEVARIIGIDIIASRYKEGAKLPGDAELTMLFGISRPVLRESV
CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH
KTLVAKGLLSTKARVGTVVRERAAWNMFDPDVLAWHLDAGIDARFLRDLSEIRLAVEPRA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCHH
AALAAERRTDQDIALMRAIITNMYAAASRGAENFAEADLGFHLLIANASGNPFMRSIGAV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCHHHHHHHHH
IEAALRVSFRLSAPRDEREFEISVAAHERIVDAIAEKNSESAAAAMTNVIFSGQRRHRAA
HHHHHHHEEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]