| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is atoS [C]
Identifier: 182679920
GI number: 182679920
Start: 3433874
End: 3436162
Strand: Reverse
Name: atoS [C]
Synonym: Bind_3015
Alternate gene names: 182679920
Gene position: 3436162-3433874 (Counterclockwise)
Preceding gene: 182679921
Following gene: 182679917
Centisome position: 82.4
GC content: 58.37
Gene sequence:
>2289_bases ATGCCCCAGCTCGCCGTTTCGCCGTCCCGTTTCCGCCTGCCGCGGCATCTTACCCGCAAACCGGTTCCTCTTGTCCTGTT GCTTGGTGCGCTCGCGGCTCTGGTGCTGGTGACCGCCGCCGGCTTATCGCTTTCCACCTTGCGTGAACGCGATTTCAATG AAGCCCGCAATCATCTTGGCATGCTCAACCAGTTTCTCGTCGAGGAAACAGATCGGACAATGTCGACTGTGGATCTCGCC TTGACAAATGTCCGGCATGAGATTCTGTCGAGGGACAGTGTGGACGAGGCGAGCTTTCTCGCGAACGGCAGCGACAAGAC GACTCGTGCCGTTCTGGTGGCCGCTCTGAAGGGCACGCCTTTCTTGCAGTCGATCGATTTAATTGCGGCCGATGGTCAGG TGATCAATTCCTCGGGCGGATCGCTGGGTGTCTTCCCACGCGAGGCGTCATCGGGCGATCAGAATAATGCCCAGGCGTTT CGCTCTGGCTGCGACGAAGATTTCGCCGAGCCATTCTTTATCGACAAGCCGGTTGAGAATCCCACGACCGGCACTATGAC GATCCCGTTCTGCCGACATATCGACAGCCTGTCCGGGACCCGTCTTGGCACGCTCAGGGGCATGATCGATATCGCCTATT TCAAGGCTTTCTATCAAATCGTCCAGAAAGACCCCAATATTGCGGTCGGTCTCTGGCGGCGCGATGGCACCATGCTTTTG CAATATCCGCCGGCTTTCATTTTCTCTCTTTTGTTGAGAGATAAGGTATCTGCGGATGCGGAGATTCCTTCCGACGACGT GCCGCGTGCCATGACCATAAAGAATTCCGAGGCTGGACCCGCGCGGCTCGTCATCGTCGGAGCCACGCGGCAATTTCCCC TTGTCGTCACGATCAGTTTCACAAGCAGTCAGATCTATCTCGCCTGGTGGCGAACGGCGGTCATGGCGGCAATCGGGTGT CTCTTATGTTTCCTGCTGATCGGATTCGCGATCTGGTTGCTGACGCGGCAATTGACAGCCTATGAGGCTCTTGACCTCGC CATTGCCGAAAAGAGCGAAGCCATCGCCGCCCGCAACGAGGCCGAGGCGCAATTGCGGCAGGCGCAAAAGCTTGAGGCGA TCGGCCAACTCACTGGCGGCATAGCCCATGATTTCAATAATCTTCTCACGGCGGTTCTCGGTAATCTCGAATTGCTCAGC CGGCATGTCGAGGGCGGAGACGCCAAGCTCCAGCGTTGGACCCGCAATGCACTCGAGGCGGCCAAACGGGGCGCCTCACT GACCGCGCGTCTCCTTGCCTTCTCGCGGCGTCAGCCGCTCGAGCCGCAGCCGGCCGATCTGTTCGCCATGCTCCAATCCA TGAGCGATCTTCTGAGCCGGACACTCGGCGAGAATATTCAGATCGAGATGCGGATCACTGAACATCTCTGGCGGCCCTTC GTCGATATCAATCAGCTCGACAATGCGATTTTGAATATCTGCCTGAATGCGCGCGATGCCATGGAGGGACGCGGCAAGCT TGTCATCGCCGCTCGCAATGTCACGCGCGAGGAAACCAACAATGACATGACCGATGATGCTTTGTCGGCTGATATCATTA AGGGTGATTATGTTCTGATCGAGATCAGTGACAAGGGGCCTGGAATCGATAAAGCTGTGCTTGAACGGGTGTTCGAGCCC TTTTTCACGACGAAGCCCATCGGCCAGGGCACGGGGCTCGGCCTCAGCCAGGTTTATGGCTTTCTCAAGCAGAGCGGTGG CCATATCGAAATCGAAAGCGAGAAAGGGCAGGGGACGACAGTTCGCTTGTTTCTGCCGCGCGCCCGCGCCGATGCCGAGC AGGCGAATGCGTCGGAACCTTTGTCACTCGCCGAACCGGTCGGGCATCGCGAAACCTTGCTCATCGTGGAGGATGACGCG GAGGTCCGTGGCTATTCCGTCGAGATTCTCAGAAGCCTTGGTTATACGGTGCTTGTTGCCAAGCAAGCGAACGAGGCCTT GGCCTATCTGCACCAGTCGCGCGCAATCGATCTTCTGTTCACCGATATCGGCTTGCCCGGCATGAATGGCCGTGATCTTG CCGAGGCGGCGCGCATGCTGCGTCCCGGCCTGCCTGTTCTGTTCACCAGCGGTTATGCCCGCTCCGGCGTGCTCGATGAA GAGCACCTTGACCTCGGAATGCAACTGCTGCGTAAACCCTTCAGCCGCACTGAATTGGCCTGGCGTCTGCGCTTTTTGCT GGCGACGCGGCAGGCGGAGGGAAGCCGCAAAGGCGCCGAAGCGAGGTGA
Upstream 100 bases:
>100_bases TTGATTTAATTTATTTTTGTCGCCGATGGAGAGCCTGGCCCTATTTGGCCCCGGTTTGGAAACAGCCGTCACATCTCCTG GAACATCTTAGAAGCTCAGG
Downstream 100 bases:
>100_bases GCCGTAACGCCTGCCAAGGATCGCGTAATCACGCGAGCTCACTGGTCTCGTCGAGCAGGAGCAGGACGCCTTCGATCGGA AGAGCGATCCAGTCGGGTCG
Product: integral membrane sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 762; Mature: 761
Protein sequence:
>762_residues MPQLAVSPSRFRLPRHLTRKPVPLVLLLGALAALVLVTAAGLSLSTLRERDFNEARNHLGMLNQFLVEETDRTMSTVDLA LTNVRHEILSRDSVDEASFLANGSDKTTRAVLVAALKGTPFLQSIDLIAADGQVINSSGGSLGVFPREASSGDQNNAQAF RSGCDEDFAEPFFIDKPVENPTTGTMTIPFCRHIDSLSGTRLGTLRGMIDIAYFKAFYQIVQKDPNIAVGLWRRDGTMLL QYPPAFIFSLLLRDKVSADAEIPSDDVPRAMTIKNSEAGPARLVIVGATRQFPLVVTISFTSSQIYLAWWRTAVMAAIGC LLCFLLIGFAIWLLTRQLTAYEALDLAIAEKSEAIAARNEAEAQLRQAQKLEAIGQLTGGIAHDFNNLLTAVLGNLELLS RHVEGGDAKLQRWTRNALEAAKRGASLTARLLAFSRRQPLEPQPADLFAMLQSMSDLLSRTLGENIQIEMRITEHLWRPF VDINQLDNAILNICLNARDAMEGRGKLVIAARNVTREETNNDMTDDALSADIIKGDYVLIEISDKGPGIDKAVLERVFEP FFTTKPIGQGTGLGLSQVYGFLKQSGGHIEIESEKGQGTTVRLFLPRARADAEQANASEPLSLAEPVGHRETLLIVEDDA EVRGYSVEILRSLGYTVLVAKQANEALAYLHQSRAIDLLFTDIGLPGMNGRDLAEAARMLRPGLPVLFTSGYARSGVLDE EHLDLGMQLLRKPFSRTELAWRLRFLLATRQAEGSRKGAEAR
Sequences:
>Translated_762_residues MPQLAVSPSRFRLPRHLTRKPVPLVLLLGALAALVLVTAAGLSLSTLRERDFNEARNHLGMLNQFLVEETDRTMSTVDLA LTNVRHEILSRDSVDEASFLANGSDKTTRAVLVAALKGTPFLQSIDLIAADGQVINSSGGSLGVFPREASSGDQNNAQAF RSGCDEDFAEPFFIDKPVENPTTGTMTIPFCRHIDSLSGTRLGTLRGMIDIAYFKAFYQIVQKDPNIAVGLWRRDGTMLL QYPPAFIFSLLLRDKVSADAEIPSDDVPRAMTIKNSEAGPARLVIVGATRQFPLVVTISFTSSQIYLAWWRTAVMAAIGC LLCFLLIGFAIWLLTRQLTAYEALDLAIAEKSEAIAARNEAEAQLRQAQKLEAIGQLTGGIAHDFNNLLTAVLGNLELLS RHVEGGDAKLQRWTRNALEAAKRGASLTARLLAFSRRQPLEPQPADLFAMLQSMSDLLSRTLGENIQIEMRITEHLWRPF VDINQLDNAILNICLNARDAMEGRGKLVIAARNVTREETNNDMTDDALSADIIKGDYVLIEISDKGPGIDKAVLERVFEP FFTTKPIGQGTGLGLSQVYGFLKQSGGHIEIESEKGQGTTVRLFLPRARADAEQANASEPLSLAEPVGHRETLLIVEDDA EVRGYSVEILRSLGYTVLVAKQANEALAYLHQSRAIDLLFTDIGLPGMNGRDLAEAARMLRPGLPVLFTSGYARSGVLDE EHLDLGMQLLRKPFSRTELAWRLRFLLATRQAEGSRKGAEAR >Mature_761_residues PQLAVSPSRFRLPRHLTRKPVPLVLLLGALAALVLVTAAGLSLSTLRERDFNEARNHLGMLNQFLVEETDRTMSTVDLAL TNVRHEILSRDSVDEASFLANGSDKTTRAVLVAALKGTPFLQSIDLIAADGQVINSSGGSLGVFPREASSGDQNNAQAFR SGCDEDFAEPFFIDKPVENPTTGTMTIPFCRHIDSLSGTRLGTLRGMIDIAYFKAFYQIVQKDPNIAVGLWRRDGTMLLQ YPPAFIFSLLLRDKVSADAEIPSDDVPRAMTIKNSEAGPARLVIVGATRQFPLVVTISFTSSQIYLAWWRTAVMAAIGCL LCFLLIGFAIWLLTRQLTAYEALDLAIAEKSEAIAARNEAEAQLRQAQKLEAIGQLTGGIAHDFNNLLTAVLGNLELLSR HVEGGDAKLQRWTRNALEAAKRGASLTARLLAFSRRQPLEPQPADLFAMLQSMSDLLSRTLGENIQIEMRITEHLWRPFV DINQLDNAILNICLNARDAMEGRGKLVIAARNVTREETNNDMTDDALSADIIKGDYVLIEISDKGPGIDKAVLERVFEPF FTTKPIGQGTGLGLSQVYGFLKQSGGHIEIESEKGQGTTVRLFLPRARADAEQANASEPLSLAEPVGHRETLLIVEDDAE VRGYSVEILRSLGYTVLVAKQANEALAYLHQSRAIDLLFTDIGLPGMNGRDLAEAARMLRPGLPVLFTSGYARSGVLDEE HLDLGMQLLRKPFSRTELAWRLRFLLATRQAEGSRKGAEAR
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=256, Percent_Identity=30.46875, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1790436, Length=253, Percent_Identity=29.2490118577075, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI87081816, Length=394, Percent_Identity=24.8730964467005, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1788713, Length=384, Percent_Identity=25.2604166666667, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI48994928, Length=232, Percent_Identity=28.8793103448276, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1790300, Length=253, Percent_Identity=28.4584980237154, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 83625; Mature: 83494
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQLAVSPSRFRLPRHLTRKPVPLVLLLGALAALVLVTAAGLSLSTLRERDFNEARNHLG CCCCCCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH MLNQFLVEETDRTMSTVDLALTNVRHEILSRDSVDEASFLANGSDKTTRAVLVAALKGTP HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCC FLQSIDLIAADGQVINSSGGSLGVFPREASSGDQNNAQAFRSGCDEDFAEPFFIDKPVEN CHHHCCEEECCCEEEECCCCEEECCCCCCCCCCCCHHHHHHCCCCHHHCCCEEECCCCCC PTTGTMTIPFCRHIDSLSGTRLGTLRGMIDIAYFKAFYQIVQKDPNIAVGLWRRDGTMLL CCCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE QYPPAFIFSLLLRDKVSADAEIPSDDVPRAMTIKNSEAGPARLVIVGATRQFPLVVTISF ECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCEEEEEEEE TSSQIYLAWWRTAVMAAIGCLLCFLLIGFAIWLLTRQLTAYEALDLAIAEKSEAIAARNE CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AEAQLRQAQKLEAIGQLTGGIAHDFNNLLTAVLGNLELLSRHVEGGDAKLQRWTRNALEA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHH AKRGASLTARLLAFSRRQPLEPQPADLFAMLQSMSDLLSRTLGENIQIEMRITEHLWRPF HHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCC VDINQLDNAILNICLNARDAMEGRGKLVIAARNVTREETNNDMTDDALSADIIKGDYVLI CCHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHEEECCEEEE EISDKGPGIDKAVLERVFEPFFTTKPIGQGTGLGLSQVYGFLKQSGGHIEIESEKGQGTT EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCE VRLFLPRARADAEQANASEPLSLAEPVGHRETLLIVEDDAEVRGYSVEILRSLGYTVLVA EEEEECCCCCCHHHCCCCCCCHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEE KQANEALAYLHQSRAIDLLFTDIGLPGMNGRDLAEAARMLRPGLPVLFTSGYARSGVLDE CHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCH EHLDLGMQLLRKPFSRTELAWRLRFLLATRQAEGSRKGAEAR HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PQLAVSPSRFRLPRHLTRKPVPLVLLLGALAALVLVTAAGLSLSTLRERDFNEARNHLG CCCCCCHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHH MLNQFLVEETDRTMSTVDLALTNVRHEILSRDSVDEASFLANGSDKTTRAVLVAALKGTP HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCC FLQSIDLIAADGQVINSSGGSLGVFPREASSGDQNNAQAFRSGCDEDFAEPFFIDKPVEN CHHHCCEEECCCEEEECCCCEEECCCCCCCCCCCCHHHHHHCCCCHHHCCCEEECCCCCC PTTGTMTIPFCRHIDSLSGTRLGTLRGMIDIAYFKAFYQIVQKDPNIAVGLWRRDGTMLL CCCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEE QYPPAFIFSLLLRDKVSADAEIPSDDVPRAMTIKNSEAGPARLVIVGATRQFPLVVTISF ECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCEEEEEEEE TSSQIYLAWWRTAVMAAIGCLLCFLLIGFAIWLLTRQLTAYEALDLAIAEKSEAIAARNE CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH AEAQLRQAQKLEAIGQLTGGIAHDFNNLLTAVLGNLELLSRHVEGGDAKLQRWTRNALEA HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHH AKRGASLTARLLAFSRRQPLEPQPADLFAMLQSMSDLLSRTLGENIQIEMRITEHLWRPF HHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCC VDINQLDNAILNICLNARDAMEGRGKLVIAARNVTREETNNDMTDDALSADIIKGDYVLI CCHHHHHHHHHHHHHCCHHHCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHEEECCEEEE EISDKGPGIDKAVLERVFEPFFTTKPIGQGTGLGLSQVYGFLKQSGGHIEIESEKGQGTT EECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCE VRLFLPRARADAEQANASEPLSLAEPVGHRETLLIVEDDAEVRGYSVEILRSLGYTVLVA EEEEECCCCCCHHHCCCCCCCHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCEEEEE KQANEALAYLHQSRAIDLLFTDIGLPGMNGRDLAEAARMLRPGLPVLFTSGYARSGVLDE CHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCH EHLDLGMQLLRKPFSRTELAWRLRFLLATRQAEGSRKGAEAR HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA