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The map label for this gene is ihfB

Identifier: 182679839

GI number: 182679839

Start: 3340200

End: 3340493

Strand: Reverse

Name: ihfB

Synonym: Bind_2928

Alternate gene names: 182679839

Gene position: 3340493-3340200 (Counterclockwise)

Preceding gene: 182679840

Following gene: 182679838

Centisome position: 80.1

GC content: 54.42

Gene sequence:

>294_bases
ATGATTAAATCGGAGCTCGTGCAGCGCATTGCTGATCGCAATCCGCATCTTTATTTGCGCGATGTTGAGAAAATCGTGAA
TGCGATTCTCGACGAGATCACCCGTGCGCTCTCGCGTGGGGACCGAGTCGAATTGCGTGGTTTTGGGGCTTTTTCTGTCA
AACGGCGCGATGCGCGGCTCGGCCGAAACCCCCGCACCGGCGCGCATGTTCCTGTCGAGGAAAAATCGGTTCCCTTCTTC
AAGACCGGCAAGGAAATGCGTGAGAGGCTCAACGAAGGCTATCTTGCTGAATAA

Upstream 100 bases:

>100_bases
GTTTGGTATCGATTTGGCAAGTTGACGCAGGTTCAAATTGACCCAGGCCCTTGAAACGGATCGAAAATCCCGGTTCCCGA
GCGGTTGATGGATTAAACGA

Downstream 100 bases:

>100_bases
GCCTCTCGCCAGCCCTGCATCGTGTGACTATGCAAGAGAGCAACGCTCGTTGAACCGGACTATGAGCGATGCGGTCAGTC
TTTATAGAAGCGCTCCATCG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARLGRNPRTGAHVPVEEKSVPFF
KTGKEMRERLNEGYLAE

Sequences:

>Translated_97_residues
MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARLGRNPRTGAHVPVEEKSVPFF
KTGKEMRERLNEGYLAE
>Mature_97_residues
MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARLGRNPRTGAHVPVEEKSVPFF
KTGKEMRERLNEGYLAE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=93, Evalue=3e-21,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=38.4615384615385, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1788005, Length=90, Percent_Identity=34.4444444444444, Blast_Score=64, Evalue=1e-12,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=64, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_BEII9 (B2IKV6)

Other databases:

- EMBL:   CP001016
- RefSeq:   YP_001833985.1
- GeneID:   6198372
- GenomeReviews:   CP001016_GR
- KEGG:   bid:Bind_2928
- HOGENOM:   HBG705085
- OMA:   VKRRDAR
- ProtClustDB:   CLSK2405794
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11191; Mature: 11191

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL
CCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC
GRNPRTGAHVPVEEKSVPFFKTGKEMRERLNEGYLAE
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL
CCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHC
GRNPRTGAHVPVEEKSVPFFKTGKEMRERLNEGYLAE
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA