| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is 182679636
Identifier: 182679636
GI number: 182679636
Start: 3100869
End: 3102341
Strand: Reverse
Name: 182679636
Synonym: Bind_2721
Alternate gene names: NA
Gene position: 3102341-3100869 (Counterclockwise)
Preceding gene: 182679638
Following gene: 182679635
Centisome position: 74.39
GC content: 53.9
Gene sequence:
>1473_bases TTGAGTCAGTCCATATCAACGTCCACTGTTACAACAGGGGCGATCACGCCGGCGCAATATGGTGCGCCAACGGATGGTGT TTCCTCTTCCGATGCCGCGATCGTCGCCGCTGCAAACGCGGCTGTCGCGCAGGGCAAGCCTCTTCTGATCGATCAAACCT ATGCGTTTATGTCGAAATGGACGCCTCCTGCCGGTCTACAATTGACCGGCAATGGCGTGGACGTTTCAACCCTTCTGTGG AAGGGAACAGGGGACGCAATCGAAATCATTAATCCGATTTCCATCGACGGTCTGACCGTGGATGGCGGCGTGCCTGCTGG TCAGGATAGAACAACCAGTGATATCAGCGTCCTTGTCAGCATTCATGGCCCGATTGATCTGACATCGCCGCGTTTGAACG GCATCACGATCGGGACCTTGCGCATCAAGGGGACGCGGAGCGTCGGCTTTGTCGTGGCAAATGTCGACAGCCTTCAAATC AGTAATCTCGACCTTCAAACGATCTATACCGGGGGCTCTATATTTTCCGGTTTGACGAATGCAAACATCGATTTGCTGAC AGCTGATGATATTGGGAACACAAAACGCTTCATCAGCCGTCAGGGAACGGCTGTGGCCGTCATGACAGAGACCAAACCCG TCTCTCTATGGTACAACCATTCAGGTATCAAGCCGACCGATGGGGTGGTCTTCGGCGTTGTCAAGCTTTCGCGGACCACC GATAGCGCATTCTATACCCATGACGACTTCGGGACGGGTGTGACCAATGTCCATGTAAAACGTATTTCCGTCGATACGAG CGGAAAAGATGGCTGTAAGACGAGAAACGGTCCGACCTATGTTCGATTTGACACTGTGGTCACGAATAAGACCTCGCTGA GAGGTCTTGATATTGAATCGAACCATACGACGGTTGGAACCGTCAATGTCTCGAATGTCGGATATGATGCAGTTGGCGAT ATTCTTGGTCATCCTGCCCCGTACACCGGTGGGGACGGCACCAATGAATCGGCGCAGACAGATCCGCAGGGGCTCGTGAT CAGCACATGCAGCGATGTTTCAGTCGCGAATATTACGATCAATCATGTTCGCGACAGCCCATATAGCGGGGGTGAGGGCC ATGGCATCCGATTGTACAGCGCCAGCGCGGTCACGCTCACAGGCAGCGTGACTGATACGGATGGCAATGGCCTGCGGATG GCTGGTTCTTCCAACGTCACTGCAAATGTGACGGTCGTAGATGCCTGCCGGAATCATAATAATACCGTTATGGCCTATAG TGTTTCGGATGGGCTGGGGCTTTCCAAGAACTGCCAATTGACTCTGGCTGTCAGCGAGACGGGCACGCCATCGGTTCCTT ATGCGGTTCGCCTGGACTCTGGCTGCGGCATTACGGCCAATGTGACGTGCAATCCCTTGCAGTTCACGAATAGCGTGCCG GTGAGGAATAATTCGTCGGCACCTTGCACGTGA
Upstream 100 bases:
>100_bases TCAGTATGTCATAAAGGACATTGCTCATTATTTATACTATAAAAGGAATTGCGCATCCATTGATGCGTAATGTATTCATA ATTTACGAAGGAGGATTGAT
Downstream 100 bases:
>100_bases GATTTTTGGCACGTGAATTTTTGCTGAAAAATAAGTGAGGATTTAACCTCATAGACCAGGAGATTCTCCCTGGTTATACG AGCTATGCTCCAGCGAAACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 489
Protein sequence:
>490_residues MSQSISTSTVTTGAITPAQYGAPTDGVSSSDAAIVAAANAAVAQGKPLLIDQTYAFMSKWTPPAGLQLTGNGVDVSTLLW KGTGDAIEIINPISIDGLTVDGGVPAGQDRTTSDISVLVSIHGPIDLTSPRLNGITIGTLRIKGTRSVGFVVANVDSLQI SNLDLQTIYTGGSIFSGLTNANIDLLTADDIGNTKRFISRQGTAVAVMTETKPVSLWYNHSGIKPTDGVVFGVVKLSRTT DSAFYTHDDFGTGVTNVHVKRISVDTSGKDGCKTRNGPTYVRFDTVVTNKTSLRGLDIESNHTTVGTVNVSNVGYDAVGD ILGHPAPYTGGDGTNESAQTDPQGLVISTCSDVSVANITINHVRDSPYSGGEGHGIRLYSASAVTLTGSVTDTDGNGLRM AGSSNVTANVTVVDACRNHNNTVMAYSVSDGLGLSKNCQLTLAVSETGTPSVPYAVRLDSGCGITANVTCNPLQFTNSVP VRNNSSAPCT
Sequences:
>Translated_490_residues MSQSISTSTVTTGAITPAQYGAPTDGVSSSDAAIVAAANAAVAQGKPLLIDQTYAFMSKWTPPAGLQLTGNGVDVSTLLW KGTGDAIEIINPISIDGLTVDGGVPAGQDRTTSDISVLVSIHGPIDLTSPRLNGITIGTLRIKGTRSVGFVVANVDSLQI SNLDLQTIYTGGSIFSGLTNANIDLLTADDIGNTKRFISRQGTAVAVMTETKPVSLWYNHSGIKPTDGVVFGVVKLSRTT DSAFYTHDDFGTGVTNVHVKRISVDTSGKDGCKTRNGPTYVRFDTVVTNKTSLRGLDIESNHTTVGTVNVSNVGYDAVGD ILGHPAPYTGGDGTNESAQTDPQGLVISTCSDVSVANITINHVRDSPYSGGEGHGIRLYSASAVTLTGSVTDTDGNGLRM AGSSNVTANVTVVDACRNHNNTVMAYSVSDGLGLSKNCQLTLAVSETGTPSVPYAVRLDSGCGITANVTCNPLQFTNSVP VRNNSSAPCT >Mature_489_residues SQSISTSTVTTGAITPAQYGAPTDGVSSSDAAIVAAANAAVAQGKPLLIDQTYAFMSKWTPPAGLQLTGNGVDVSTLLWK GTGDAIEIINPISIDGLTVDGGVPAGQDRTTSDISVLVSIHGPIDLTSPRLNGITIGTLRIKGTRSVGFVVANVDSLQIS NLDLQTIYTGGSIFSGLTNANIDLLTADDIGNTKRFISRQGTAVAVMTETKPVSLWYNHSGIKPTDGVVFGVVKLSRTTD SAFYTHDDFGTGVTNVHVKRISVDTSGKDGCKTRNGPTYVRFDTVVTNKTSLRGLDIESNHTTVGTVNVSNVGYDAVGDI LGHPAPYTGGDGTNESAQTDPQGLVISTCSDVSVANITINHVRDSPYSGGEGHGIRLYSASAVTLTGSVTDTDGNGLRMA GSSNVTANVTVVDACRNHNNTVMAYSVSDGLGLSKNCQLTLAVSETGTPSVPYAVRLDSGCGITANVTCNPLQFTNSVPV RNNSSAPCT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50640; Mature: 50509
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQSISTSTVTTGAITPAQYGAPTDGVSSSDAAIVAAANAAVAQGKPLLIDQTYAFMSKW CCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCEEEEECCCHHHCCCEEEEECHHHHHHCC TPPAGLQLTGNGVDVSTLLWKGTGDAIEIINPISIDGLTVDGGVPAGQDRTTSDISVLVS CCCCCCEEECCCCEEEEEEEECCCCEEEEECCEEECCEEECCCCCCCCCCCCCCEEEEEE IHGPIDLTSPRLNGITIGTLRIKGTRSVGFVVANVDSLQISNLDLQTIYTGGSIFSGLTN ECCCEEECCCCCCCEEEEEEEEECCCCEEEEEEECCCEEEECCEEEEEEECCHHHCCCCC ANIDLLTADDIGNTKRFISRQGTAVAVMTETKPVSLWYNHSGIKPTDGVVFGVVKLSRTT CCEEEEEECCCCCHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCC DSAFYTHDDFGTGVTNVHVKRISVDTSGKDGCKTRNGPTYVRFDTVVTNKTSLRGLDIES CCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECC NHTTVGTVNVSNVGYDAVGDILGHPAPYTGGDGTNESAQTDPQGLVISTCSDVSVANITI CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEE NHVRDSPYSGGEGHGIRLYSASAVTLTGSVTDTDGNGLRMAGSSNVTANVTVVDACRNHN EEEECCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEECCCC NTVMAYSVSDGLGLSKNCQLTLAVSETGTPSVPYAVRLDSGCGITANVTCNPLQFTNSVP CEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCEEECCCCC VRNNSSAPCT CCCCCCCCCC >Mature Secondary Structure SQSISTSTVTTGAITPAQYGAPTDGVSSSDAAIVAAANAAVAQGKPLLIDQTYAFMSKW CCCCCCCEEEECCCCCHHCCCCCCCCCCCCCEEEEECCCHHHCCCEEEEECHHHHHHCC TPPAGLQLTGNGVDVSTLLWKGTGDAIEIINPISIDGLTVDGGVPAGQDRTTSDISVLVS CCCCCCEEECCCCEEEEEEEECCCCEEEEECCEEECCEEECCCCCCCCCCCCCCEEEEEE IHGPIDLTSPRLNGITIGTLRIKGTRSVGFVVANVDSLQISNLDLQTIYTGGSIFSGLTN ECCCEEECCCCCCCEEEEEEEEECCCCEEEEEEECCCEEEECCEEEEEEECCHHHCCCCC ANIDLLTADDIGNTKRFISRQGTAVAVMTETKPVSLWYNHSGIKPTDGVVFGVVKLSRTT CCEEEEEECCCCCHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEECCC DSAFYTHDDFGTGVTNVHVKRISVDTSGKDGCKTRNGPTYVRFDTVVTNKTSLRGLDIES CCEEEEECCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEECC NHTTVGTVNVSNVGYDAVGDILGHPAPYTGGDGTNESAQTDPQGLVISTCSDVSVANITI CCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEE NHVRDSPYSGGEGHGIRLYSASAVTLTGSVTDTDGNGLRMAGSSNVTANVTVVDACRNHN EEEECCCCCCCCCCEEEEEEEEEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEECCCC NTVMAYSVSDGLGLSKNCQLTLAVSETGTPSVPYAVRLDSGCGITANVTCNPLQFTNSVP CEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCEEECCCCC VRNNSSAPCT CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA