Click here to switch to the map view.

The map label for this gene is intR [C]

Identifier: 182679580

GI number: 182679580

Start: 3033408

End: 3034631

Strand: Reverse

Name: intR [C]

Synonym: Bind_2665

Alternate gene names: 182679580

Gene position: 3034631-3033408 (Counterclockwise)

Preceding gene: 182679591

Following gene: 182679579

Centisome position: 72.77

GC content: 55.47

Gene sequence:

>1224_bases
ATGTCAGTTCGAAAGCGTAGCTGGACCACGGCAAAGGGTGAGAAGAAAGAGGCCTGGGTCGCCGATTATGTCGACCAAGC
CGGAAAGCGCCATCTCAAAACTTTTGATCGCAAGAAAGAAGCAGATGCTTTCCATGCGAAGGCTAATGTCGAGATTCGGG
AAGGTACGCATACACCTGATAGTGCGAGCGTGACCGTGACCGAAGCGGCAAATTTGTGGCTCGAAACCGGGCGCGGGCGC
AGACTCGAATCATCAACTCTCGATTCTTATGAACAGCATGTTCGTCTTCATCTTGTGCCGTTCATTGGCAGGCTGAAGCT
TTCACAATTGACCGTTCCCATGATCCGCGAATTGGAGGACAAGCTGCGACGCGGCGATCCGGCGCCAGGCGCAGGGGAGG
GCGCGGCGCGATCGGCTGACATGATCAAGCGGATTGTTTCGAGCCTTGGTGCCATGCTTGGCGACGCCCAGGAGCGTGGA
CTTGTGTCGCGAAATGTCGTGCGGGACCTTCGATCAGGGCGTCGCCGCAGCTCTGAAAAGAAAAAAGATGATAGGCAGAA
AGGCAAACTGAAAGTTGGGATCGATATTCCGACGCCTAACGAAATCAAAGCGTTTATCGGGGCTTTGCAAGGCCAATATC
GGCCATTGCTACTCACGGCTACTTTCACGGGCCTTCGTGCTTCTGAGCTTCGTGGCTTGCGGTGGGCTGATCTCGATTTC
GAGCGACGCGAACTGCATGTTCGGCAGAGAATGGATAAACGCAATGTAGCTGGGCCGCCAAAATCAGGGGCGGGCGAGCG
CAAGATCCCGATGCCGCCAATCGTGATAGACACATTGCGTGAATGGCGATTGGCTTGTCCGAAGGGTACGGCGGATCTTG
TTTTTCCTACGGGGAACGGCCGGCCCGAGCATCATGCCAATATTGCGCAACGTGGGCTCATCCCTGCGTGGATCGCGGCT
GGCGTGACGGTTCCAGGGTTGGACAAAGAAGGCAAGCCGATCGAGGCCGCAAAATATCCAGGCTTGCATGCGCTTCGGCA
TTTCTACGCCTCATGGCTCATAAACCGAAAGGCCGATGGCGGACTAGAATTGCCGCCGAAGCTGGTTCAAGAACGTCTCG
GGCACTCAACCATCGCGATGACCCTCGACACTTATTCTCACCTATTTCCGCGTGTGGATGATGCTGATGAGCTTGCCCAA
GCAGAGCGCGTACTTTTAGGTTGA

Upstream 100 bases:

>100_bases
TATTTATACACATATGAACAGGGCTGGCAATGGAATGATGTGCCTATTGACGTGAGGATTTTTGTGCGACATGATCGACC
TATCGGATGAGGGCGTCGGC

Downstream 100 bases:

>100_bases
ATGCGACACAGACGCGACATGGTGTGAGTATAGCATATATAAATCAAATAATTAGTGTATAAAATAAGAGGAATCATAAT
CCTTGTGTCGGGGGTTCGAG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSVRKRSWTTAKGEKKEAWVADYVDQAGKRHLKTFDRKKEADAFHAKANVEIREGTHTPDSASVTVTEAANLWLETGRGR
RLESSTLDSYEQHVRLHLVPFIGRLKLSQLTVPMIRELEDKLRRGDPAPGAGEGAARSADMIKRIVSSLGAMLGDAQERG
LVSRNVVRDLRSGRRRSSEKKKDDRQKGKLKVGIDIPTPNEIKAFIGALQGQYRPLLLTATFTGLRASELRGLRWADLDF
ERRELHVRQRMDKRNVAGPPKSGAGERKIPMPPIVIDTLREWRLACPKGTADLVFPTGNGRPEHHANIAQRGLIPAWIAA
GVTVPGLDKEGKPIEAAKYPGLHALRHFYASWLINRKADGGLELPPKLVQERLGHSTIAMTLDTYSHLFPRVDDADELAQ
AERVLLG

Sequences:

>Translated_407_residues
MSVRKRSWTTAKGEKKEAWVADYVDQAGKRHLKTFDRKKEADAFHAKANVEIREGTHTPDSASVTVTEAANLWLETGRGR
RLESSTLDSYEQHVRLHLVPFIGRLKLSQLTVPMIRELEDKLRRGDPAPGAGEGAARSADMIKRIVSSLGAMLGDAQERG
LVSRNVVRDLRSGRRRSSEKKKDDRQKGKLKVGIDIPTPNEIKAFIGALQGQYRPLLLTATFTGLRASELRGLRWADLDF
ERRELHVRQRMDKRNVAGPPKSGAGERKIPMPPIVIDTLREWRLACPKGTADLVFPTGNGRPEHHANIAQRGLIPAWIAA
GVTVPGLDKEGKPIEAAKYPGLHALRHFYASWLINRKADGGLELPPKLVQERLGHSTIAMTLDTYSHLFPRVDDADELAQ
AERVLLG
>Mature_406_residues
SVRKRSWTTAKGEKKEAWVADYVDQAGKRHLKTFDRKKEADAFHAKANVEIREGTHTPDSASVTVTEAANLWLETGRGRR
LESSTLDSYEQHVRLHLVPFIGRLKLSQLTVPMIRELEDKLRRGDPAPGAGEGAARSADMIKRIVSSLGAMLGDAQERGL
VSRNVVRDLRSGRRRSSEKKKDDRQKGKLKVGIDIPTPNEIKAFIGALQGQYRPLLLTATFTGLRASELRGLRWADLDFE
RRELHVRQRMDKRNVAGPPKSGAGERKIPMPPIVIDTLREWRLACPKGTADLVFPTGNGRPEHHANIAQRGLIPAWIAAG
VTVPGLDKEGKPIEAAKYPGLHALRHFYASWLINRKADGGLELPPKLVQERLGHSTIAMTLDTYSHLFPRVDDADELAQA
ERVLLG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45320; Mature: 45188

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRKRSWTTAKGEKKEAWVADYVDQAGKRHLKTFDRKKEADAFHAKANVEIREGTHTPD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
SASVTVTEAANLWLETGRGRRLESSTLDSYEQHVRLHLVPFIGRLKLSQLTVPMIRELED
CCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHCCHHHHHHHHH
KLRRGDPAPGAGEGAARSADMIKRIVSSLGAMLGDAQERGLVSRNVVRDLRSGRRRSSEK
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCHHH
KKDDRQKGKLKVGIDIPTPNEIKAFIGALQGQYRPLLLTATFTGLRASELRGLRWADLDF
HHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHCCCEECCCCH
ERRELHVRQRMDKRNVAGPPKSGAGERKIPMPPIVIDTLREWRLACPKGTADLVFPTGNG
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCC
RPEHHANIAQRGLIPAWIAAGVTVPGLDKEGKPIEAAKYPGLHALRHFYASWLINRKADG
CCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCC
GLELPPKLVQERLGHSTIAMTLDTYSHLFPRVDDADELAQAERVLLG
CCCCCHHHHHHHCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SVRKRSWTTAKGEKKEAWVADYVDQAGKRHLKTFDRKKEADAFHAKANVEIREGTHTPD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC
SASVTVTEAANLWLETGRGRRLESSTLDSYEQHVRLHLVPFIGRLKLSQLTVPMIRELED
CCCEEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHCCHHHHHHHHH
KLRRGDPAPGAGEGAARSADMIKRIVSSLGAMLGDAQERGLVSRNVVRDLRSGRRRSSEK
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHCHHH
KKDDRQKGKLKVGIDIPTPNEIKAFIGALQGQYRPLLLTATFTGLRASELRGLRWADLDF
HHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHCCCEECCCCH
ERRELHVRQRMDKRNVAGPPKSGAGERKIPMPPIVIDTLREWRLACPKGTADLVFPTGNG
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCC
RPEHHANIAQRGLIPAWIAAGVTVPGLDKEGKPIEAAKYPGLHALRHFYASWLINRKADG
CCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCCCCC
GLELPPKLVQERLGHSTIAMTLDTYSHLFPRVDDADELAQAERVLLG
CCCCCHHHHHHHCCCCEEEEEHHHHHHHCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]