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The map label for this gene is yqhC [H]

Identifier: 182679544

GI number: 182679544

Start: 2975261

End: 2976160

Strand: Reverse

Name: yqhC [H]

Synonym: Bind_2611

Alternate gene names: 182679544

Gene position: 2976160-2975261 (Counterclockwise)

Preceding gene: 182679550

Following gene: 182679543

Centisome position: 71.37

GC content: 65.0

Gene sequence:

>900_bases
ATGGAAACACTGACCGAAATCTCTGCGGTGATTGCCCGGCACGTCTCGAAGGATGGCTTCCACGCCACCCCCATCGAACG
GGTGAGGCTTGCTCGATCCTCCACGGTGACGATGCCGATGCCGAATGTTTACCGGCCGCAATTGTGCCTCGTTGCACAGG
GGCAGAAGGAGGTCACGCTGGGTGACCACGTGTTCCGATATGCGCCGGGCCGCTATGGGGTCGTGACGTACGACCTACCC
GCTGTAGGCCATGTGATCGAAGCGACGCCTGAGAAGCCCTATCTCTGCCTGTTCCTCGATTTCGATCCGGTGATGCTGGG
CGAGTTGGCGTCGCGCGTGCTGCCTCCGCCGGGAGCGCCCTCCCTGCCCATAGGCAAGACGGTGTCCGACGCCGGCACCA
GTCTGCTCGACGCGGTCCTACGCCTGCTGCGCCTGCTCGACGATCCGGCAGCGCTGCCCGTGCTCGGGCCGCTTGCCGAG
CAGGAAATTCTCTATCGCCTGCTTGCCGGCCCGGACGGCGCCAGGATGCGCCACATCACTTCCAGCCAGGGTCGGGTGGC
CCAGGTCGGCCGCGCCATCGCCTGGATCGGGCAGCACTTCCGGGAACGGTTCAGCATCGAACGGCTTGCCGCGGAAGTGG
GCATGAGCCCGTCGAGCGTGCACGAGCATTTTCGCGCCGTGACGGCGATGACGCCGCTGCAGTTCCAGAAGCAGCTCAGG
CTGCAGGACGCGCGCAGCTTGATGCTGGTAGAGGATATCGACATCACGACTGCCGCCCTCCGCGTGGGTTACGAAAGCCC
GTCGCAGTTCAGTCGCGAATATCGCCGCCACTTTGGAGAACCGCCGGCGCGCGACATAGCCCGCTTACGCGCTTCGCCGG
GCTTGGCAGTGGTAGCTTGA

Upstream 100 bases:

>100_bases
GAAACCGAACCGTTAGCCTGATGCGCCGGGATTACTGCCCAATCCTCCAGAAGCCGCGTTTCGCATTGCCGCCCTTCCGC
GCATCTGCGATGGTCGTCTC

Downstream 100 bases:

>100_bases
GTTCAGCTTACCGACGTCGGCGTTTCGTCGAACAGCCGTGGCGTGCGTTAGAATCCCTCTGATTTAAGTTGAAGCATAAC
CGGCGTGTCGGATGTATGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
METLTEISAVIARHVSKDGFHATPIERVRLARSSTVTMPMPNVYRPQLCLVAQGQKEVTLGDHVFRYAPGRYGVVTYDLP
AVGHVIEATPEKPYLCLFLDFDPVMLGELASRVLPPPGAPSLPIGKTVSDAGTSLLDAVLRLLRLLDDPAALPVLGPLAE
QEILYRLLAGPDGARMRHITSSQGRVAQVGRAIAWIGQHFRERFSIERLAAEVGMSPSSVHEHFRAVTAMTPLQFQKQLR
LQDARSLMLVEDIDITTAALRVGYESPSQFSREYRRHFGEPPARDIARLRASPGLAVVA

Sequences:

>Translated_299_residues
METLTEISAVIARHVSKDGFHATPIERVRLARSSTVTMPMPNVYRPQLCLVAQGQKEVTLGDHVFRYAPGRYGVVTYDLP
AVGHVIEATPEKPYLCLFLDFDPVMLGELASRVLPPPGAPSLPIGKTVSDAGTSLLDAVLRLLRLLDDPAALPVLGPLAE
QEILYRLLAGPDGARMRHITSSQGRVAQVGRAIAWIGQHFRERFSIERLAAEVGMSPSSVHEHFRAVTAMTPLQFQKQLR
LQDARSLMLVEDIDITTAALRVGYESPSQFSREYRRHFGEPPARDIARLRASPGLAVVA
>Mature_299_residues
METLTEISAVIARHVSKDGFHATPIERVRLARSSTVTMPMPNVYRPQLCLVAQGQKEVTLGDHVFRYAPGRYGVVTYDLP
AVGHVIEATPEKPYLCLFLDFDPVMLGELASRVLPPPGAPSLPIGKTVSDAGTSLLDAVLRLLRLLDDPAALPVLGPLAE
QEILYRLLAGPDGARMRHITSSQGRVAQVGRAIAWIGQHFRERFSIERLAAEVGMSPSSVHEHFRAVTAMTPLQFQKQLR
LQDARSLMLVEDIDITTAALRVGYESPSQFSREYRRHFGEPPARDIARLRASPGLAVVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=272, Percent_Identity=36.0294117647059, Blast_Score=154, Evalue=7e-39,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32870; Mature: 32870

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLTEISAVIARHVSKDGFHATPIERVRLARSSTVTMPMPNVYRPQLCLVAQGQKEVTL
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCEEH
GDHVFRYAPGRYGVVTYDLPAVGHVIEATPEKPYLCLFLDFDPVMLGELASRVLPPPGAP
HHHHHHCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCC
SLPIGKTVSDAGTSLLDAVLRLLRLLDDPAALPVLGPLAEQEILYRLLAGPDGARMRHIT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC
SSQGRVAQVGRAIAWIGQHFRERFSIERLAAEVGMSPSSVHEHFRAVTAMTPLQFQKQLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
LQDARSLMLVEDIDITTAALRVGYESPSQFSREYRRHFGEPPARDIARLRASPGLAVVA
HHHHHCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
METLTEISAVIARHVSKDGFHATPIERVRLARSSTVTMPMPNVYRPQLCLVAQGQKEVTL
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCEEEEECCCCCEEH
GDHVFRYAPGRYGVVTYDLPAVGHVIEATPEKPYLCLFLDFDPVMLGELASRVLPPPGAP
HHHHHHCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCC
SLPIGKTVSDAGTSLLDAVLRLLRLLDDPAALPVLGPLAEQEILYRLLAGPDGARMRHIT
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC
SSQGRVAQVGRAIAWIGQHFRERFSIERLAAEVGMSPSSVHEHFRAVTAMTPLQFQKQLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
LQDARSLMLVEDIDITTAALRVGYESPSQFSREYRRHFGEPPARDIARLRASPGLAVVA
HHHHHCEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]