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The map label for this gene is ykgD [C]

Identifier: 182679543

GI number: 182679543

Start: 2973740

End: 2974681

Strand: Reverse

Name: ykgD [C]

Synonym: Bind_2609

Alternate gene names: 182679543

Gene position: 2974681-2973740 (Counterclockwise)

Preceding gene: 182679544

Following gene: 182679542

Centisome position: 71.33

GC content: 60.51

Gene sequence:

>942_bases
ATGGACCCGCTGTCAGATGTGCTGGCACTCCTGAAACTGCGCAGTTACGTTTCAGGCGGCTTCGATGCGGGTGGAGACTG
GGCCATCAGCTTCGGGCCGCACGATGGAATCAAGTTCCACGCCGTCGTGACCGGGTCATGCTGGATATCGGTCGAAGGCG
ATGCATTCACACGGGTCAACACGGGCGAATGCTTCTTGCTCCCGCGGGGCCGACCCTTCCGCATCGCCAGCGATCCGTCG
GTGGAGCCGGTCCCCGTGAGCGAAGTCCTGCCGCCGCAACCCAATGGTCGCATCATGACCTACAATGGGGGTGGAGACTA
TCTGAGCATCGGTGGCTACTTCACGCTGTCGGAAGGACAGTCGGAGCTGCTTCTGAATGTCCTTCCGCCACTCCTCCACA
TCCGTGACGAGCCCGGGAGTGCGACGTTACGCTGGTGCGTCGAACGCATGCGGCAGGAGCTTGCCGAGGGACAACCTGGT
GATTTCATTGTCGCCCAGCAGCTGGCGACCATCGTGCTGGTGCAGGCGCTGCGGCTTTACCTATCCGGCCGAACAACCGA
AGAGGCAGGATGGCTCTTCGCGCTCGCAGACAAGCGGCTACGCGCGGCTATCGTGGCGATGCACGGAGCACCTGACCGGC
GGTGGACGCTTCACACCCTAGCGAGCGTGGCAGGGATGTCGCGCACTGCTTTTGCGGTGACCTTCAGGGAGGCGGTGGGC
TTGTCACCAATGGAATACCTGGCGCATTGGCGGATGACACTCGCCGCCGAGGAATTAGCCCACTCGCGGAAATCAATCGC
GGCGATCGCACTGGAGGTTGGCTATGAATCAGAGAAGTCCTTTAGCACGGCTTTTAAGAGAGTGAAGGGTCGACCGCCGC
GTGAATTTAGCCGGCTTCAAAAGCAAATATCCGGCCGAATGGATCAAGCCGTATTCAAATAG

Upstream 100 bases:

>100_bases
GCGCCGCTTCACGCTCACCTCGCCGCAACCTACGGCGTTGAATAGGGACGATTAATAACCTATAATTTGGAATTAGTTTT
CGATCGTTCAGGAATGGCGA

Downstream 100 bases:

>100_bases
ATCCACTATATAAACAATGAATATTCGTTCACGTCGGCGACGAAGTAGGCCAATTTTTTATGCGACAAGCGAGACAATCC
CTAGAAGCACTTGAAGTCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHDGIKFHAVVTGSCWISVEGDAFTRVNTGECFLLPRGRPFRIASDPS
VEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSEGQSELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPG
DFIVAQQLATIVLVQALRLYLSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFREAVG
LSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFSRLQKQISGRMDQAVFK

Sequences:

>Translated_313_residues
MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHDGIKFHAVVTGSCWISVEGDAFTRVNTGECFLLPRGRPFRIASDPS
VEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSEGQSELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPG
DFIVAQQLATIVLVQALRLYLSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFREAVG
LSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFSRLQKQISGRMDQAVFK
>Mature_313_residues
MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHDGIKFHAVVTGSCWISVEGDAFTRVNTGECFLLPRGRPFRIASDPS
VEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSEGQSELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPG
DFIVAQQLATIVLVQALRLYLSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFREAVG
LSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFSRLQKQISGRMDQAVFK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=309, Percent_Identity=28.1553398058252, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34405; Mature: 34405

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHDGIKFHAVVTGSCWISVEGDAFTRVN
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCEEEEEC
TGECFLLPRGRPFRIASDPSVEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSEGQ
CCEEEEEECCCCEEECCCCCCCCCCHHHCCCCCCCCEEEEECCCCCEEEECCEEEECCCC
SELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPGDFIVAQQLATIVLVQALRLY
HHHHHHHHCHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFREAVG
HCCCCCCCCCEEEEEHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCHHHEEEEHHHHC
LSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFSRLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHH
KQISGRMDQAVFK
HHHHCHHHHHHCC
>Mature Secondary Structure
MDPLSDVLALLKLRSYVSGGFDAGGDWAISFGPHDGIKFHAVVTGSCWISVEGDAFTRVN
CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEEEEEECCCEEEEEC
TGECFLLPRGRPFRIASDPSVEPVPVSEVLPPQPNGRIMTYNGGGDYLSIGGYFTLSEGQ
CCEEEEEECCCCEEECCCCCCCCCCHHHCCCCCCCCEEEEECCCCCEEEECCEEEECCCC
SELLLNVLPPLLHIRDEPGSATLRWCVERMRQELAEGQPGDFIVAQQLATIVLVQALRLY
HHHHHHHHCHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LSGRTTEEAGWLFALADKRLRAAIVAMHGAPDRRWTLHTLASVAGMSRTAFAVTFREAVG
HCCCCCCCCCEEEEEHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCHHHEEEEHHHHC
LSPMEYLAHWRMTLAAEELAHSRKSIAAIALEVGYESEKSFSTAFKRVKGRPPREFSRLQ
CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHCCCCCHHHHHHH
KQISGRMDQAVFK
HHHHCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]