| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is yyaJ [H]
Identifier: 182679515
GI number: 182679515
Start: 2940481
End: 2941908
Strand: Reverse
Name: yyaJ [H]
Synonym: Bind_2576
Alternate gene names: 182679515
Gene position: 2941908-2940481 (Counterclockwise)
Preceding gene: 182679520
Following gene: 182679513
Centisome position: 70.55
GC content: 57.28
Gene sequence:
>1428_bases GTGGCTGAACAGTTTGCGGCCGATCCGGCAGGTCGTATTGGGCGTCGGATCGACGCACTACCGATGTCGCGCCGGTTGTG GACCTGGGTGTTTCTGATATCTGTCGGCGGGCTTTTCGAAATCTATGATATGGCGCTAACCGCGCCGCTGTCCGCGGCGC TTGTGGCTGCGCACATCTTTCACCCTGGCGAAACCGGTCTATTCGGGCTGGCCGACCAGGCGACCTTTGTCTTTGCGACT TTCTCGGGTTTATATATTGGCGTGCTCGCCTTTTCGGCTTTCGGTGATCGGCTCGGCCGCCGCTCTGTCTTCGCGATATC GCTGATCTGGTATGCCATTGCCACACTTGTGATGGGCCTGCAGAACTCAGTGATCCCAATCTGTCTGTGGCGCTTTCTGG CAGGTGTGGGGCTTGGCGCGGAAGCAGTCGCGATCGACTGCTTCCTTGTGGAACTCGTGCCATCCCGCATACGAGGGAGA GCTTTTGCGATCTCCATGGGCATCCAGTATTGCGGAATACCGTTAGCCGCCTTCCTCGCTGTTTTTCTCGTCGGCCACGC ACCATTGGGTATCGATGGTTGGCGATGGCTGACCTTCATGCCAGTGATCGGCGCGATCGGCTTCTGGGATGCACGTCGGC GTTTACCTGAATCTCCACGATGGCTGGCGCAAAAAGGCCGCGTGGAAGAGGCGGCCCGTGTGGTCGATTTGCTGGATGAT GGTTCTGGCCTTATCGTTAGTCATTCAGGCCTCAAGAGAAAACCGCGCGTCGTTTTTGTTTCACGGCATCATGTGGTGCA CATGGCCTGGATGATGCTGGTCTACTTCAACCTGCAGAACATCGCCTTTTATGGCTTCGGCAGCTGGCTCCCGACCTTGA TCCAGTCGCAAGGTGCCAATCTGAAATCGAGTTTGTTCTACTCTGCAGGCGTGGCATTGGCGGCACCGACCGCGCCACTG CTGCTTAGCTTGATCAGTGACAGATTCGAACGCAAGCATCTGATCATCGTTAGCGGCTTGTTTGCTGTCGTCGCGGGTCT TAGTTTTGCCTACGCCGATGCCCCACTTGGCTGGGTTGTGTTCGGCATTGGACTGACGCTGAGCAATTCAGTGTTGTCGG TCAACAGTCACAACTACCTCAGCGAACTGTTCCCGACTCGCATCCGGGCGCGAATGGTCGGCTTCCTCTACTCGTTCACC CGGCTCTCCGCTGCCGTCAGCGGCTACATCATCGCCTATGTGCTGGCGGAAACCGGTGTAAAGGGAGTCTTCGCGCTGAT CAGTACGCTCATGATCGTGGCAATATCCGTCATCGGGCTGTTCGGACCTCGGACGTCTGGCGTGACTTTCGACGAGGCCG CTTCCGATGATCAGATTCCCGTCGGAACGGGCAATTCGGAGACCGACAAAAAACTGGGGAGTCGCTGA
Upstream 100 bases:
>100_bases CGCAGAACATGATGAATTCAATCAAGATTGATGCTTTACGCTTCTCGAAATATGTTCCGGCGAACAATGGCATTGACCGC GAGCCAATGGGAGGAAGACT
Downstream 100 bases:
>100_bases GGGAAACTCCACTGTCGGACGGTCGATAACCGGGTTCTGTTCCAATTTGCGTGCTTGATTGGCTTGGGAGAGCCGAGCCC CCATATATAGGGCATGCGGA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 475; Mature: 474
Protein sequence:
>475_residues MAEQFAADPAGRIGRRIDALPMSRRLWTWVFLISVGGLFEIYDMALTAPLSAALVAAHIFHPGETGLFGLADQATFVFAT FSGLYIGVLAFSAFGDRLGRRSVFAISLIWYAIATLVMGLQNSVIPICLWRFLAGVGLGAEAVAIDCFLVELVPSRIRGR AFAISMGIQYCGIPLAAFLAVFLVGHAPLGIDGWRWLTFMPVIGAIGFWDARRRLPESPRWLAQKGRVEEAARVVDLLDD GSGLIVSHSGLKRKPRVVFVSRHHVVHMAWMMLVYFNLQNIAFYGFGSWLPTLIQSQGANLKSSLFYSAGVALAAPTAPL LLSLISDRFERKHLIIVSGLFAVVAGLSFAYADAPLGWVVFGIGLTLSNSVLSVNSHNYLSELFPTRIRARMVGFLYSFT RLSAAVSGYIIAYVLAETGVKGVFALISTLMIVAISVIGLFGPRTSGVTFDEAASDDQIPVGTGNSETDKKLGSR
Sequences:
>Translated_475_residues MAEQFAADPAGRIGRRIDALPMSRRLWTWVFLISVGGLFEIYDMALTAPLSAALVAAHIFHPGETGLFGLADQATFVFAT FSGLYIGVLAFSAFGDRLGRRSVFAISLIWYAIATLVMGLQNSVIPICLWRFLAGVGLGAEAVAIDCFLVELVPSRIRGR AFAISMGIQYCGIPLAAFLAVFLVGHAPLGIDGWRWLTFMPVIGAIGFWDARRRLPESPRWLAQKGRVEEAARVVDLLDD GSGLIVSHSGLKRKPRVVFVSRHHVVHMAWMMLVYFNLQNIAFYGFGSWLPTLIQSQGANLKSSLFYSAGVALAAPTAPL LLSLISDRFERKHLIIVSGLFAVVAGLSFAYADAPLGWVVFGIGLTLSNSVLSVNSHNYLSELFPTRIRARMVGFLYSFT RLSAAVSGYIIAYVLAETGVKGVFALISTLMIVAISVIGLFGPRTSGVTFDEAASDDQIPVGTGNSETDKKLGSR >Mature_474_residues AEQFAADPAGRIGRRIDALPMSRRLWTWVFLISVGGLFEIYDMALTAPLSAALVAAHIFHPGETGLFGLADQATFVFATF SGLYIGVLAFSAFGDRLGRRSVFAISLIWYAIATLVMGLQNSVIPICLWRFLAGVGLGAEAVAIDCFLVELVPSRIRGRA FAISMGIQYCGIPLAAFLAVFLVGHAPLGIDGWRWLTFMPVIGAIGFWDARRRLPESPRWLAQKGRVEEAARVVDLLDDG SGLIVSHSGLKRKPRVVFVSRHHVVHMAWMMLVYFNLQNIAFYGFGSWLPTLIQSQGANLKSSLFYSAGVALAAPTAPLL LSLISDRFERKHLIIVSGLFAVVAGLSFAYADAPLGWVVFGIGLTLSNSVLSVNSHNYLSELFPTRIRARMVGFLYSFTR LSAAVSGYIIAYVLAETGVKGVFALISTLMIVAISVIGLFGPRTSGVTFDEAASDDQIPVGTGNSETDKKLGSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI302148518, Length=345, Percent_Identity=22.0289855072464, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1788074, Length=463, Percent_Identity=27.645788336933, Blast_Score=123, Evalue=3e-29, Organism=Escherichia coli, GI1788068, Length=472, Percent_Identity=25.635593220339, Blast_Score=115, Evalue=9e-27, Organism=Escherichia coli, GI87082159, Length=400, Percent_Identity=26.75, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786229, Length=407, Percent_Identity=26.7813267813268, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1790550, Length=451, Percent_Identity=24.390243902439, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1790463, Length=414, Percent_Identity=24.6376811594203, Blast_Score=66, Evalue=5e-12, Organism=Caenorhabditis elegans, GI25145172, Length=451, Percent_Identity=23.5033259423503, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6320595, Length=217, Percent_Identity=29.9539170506912, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI19922616, Length=408, Percent_Identity=23.2843137254902, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 51434; Mature: 51303
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEQFAADPAGRIGRRIDALPMSRRLWTWVFLISVGGLFEIYDMALTAPLSAALVAAHIF CCCCCCCCCHHHHHCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC HPGETGLFGLADQATFVFATFSGLYIGVLAFSAFGDRLGRRSVFAISLIWYAIATLVMGL CCCCCCCEECCCCHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH QNSVIPICLWRFLAGVGLGAEAVAIDCFLVELVPSRIRGRAFAISMGIQYCGIPLAAFLA CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCHHHHHHH VFLVGHAPLGIDGWRWLTFMPVIGAIGFWDARRRLPESPRWLAQKGRVEEAARVVDLLDD HHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCC GSGLIVSHSGLKRKPRVVFVSRHHVVHMAWMMLVYFNLQNIAFYGFGSWLPTLIQSQGAN CCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHCCCC LKSSLFYSAGVALAAPTAPLLLSLISDRFERKHLIIVSGLFAVVAGLSFAYADAPLGWVV HHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHH FGIGLTLSNSVLSVNSHNYLSELFPTRIRARMVGFLYSFTRLSAAVSGYIIAYVLAETGV HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH KGVFALISTLMIVAISVIGLFGPRTSGVTFDEAASDDQIPVGTGNSETDKKLGSR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure AEQFAADPAGRIGRRIDALPMSRRLWTWVFLISVGGLFEIYDMALTAPLSAALVAAHIF CCCCCCCCHHHHHCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC HPGETGLFGLADQATFVFATFSGLYIGVLAFSAFGDRLGRRSVFAISLIWYAIATLVMGL CCCCCCCEECCCCHHEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH QNSVIPICLWRFLAGVGLGAEAVAIDCFLVELVPSRIRGRAFAISMGIQYCGIPLAAFLA CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCHHHHHHH VFLVGHAPLGIDGWRWLTFMPVIGAIGFWDARRRLPESPRWLAQKGRVEEAARVVDLLDD HHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHCCCHHHHHHHHHHHCC GSGLIVSHSGLKRKPRVVFVSRHHVVHMAWMMLVYFNLQNIAFYGFGSWLPTLIQSQGAN CCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHCCCC LKSSLFYSAGVALAAPTAPLLLSLISDRFERKHLIIVSGLFAVVAGLSFAYADAPLGWVV HHHHHHHHCCCHHCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHH FGIGLTLSNSVLSVNSHNYLSELFPTRIRARMVGFLYSFTRLSAAVSGYIIAYVLAETGV HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH KGVFALISTLMIVAISVIGLFGPRTSGVTFDEAASDDQIPVGTGNSETDKKLGSR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]