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The map label for this gene is rbcR [H]

Identifier: 182679422

GI number: 182679422

Start: 2822467

End: 2823372

Strand: Reverse

Name: rbcR [H]

Synonym: Bind_2471

Alternate gene names: 182679422

Gene position: 2823372-2822467 (Counterclockwise)

Preceding gene: 182679432

Following gene: 182679420

Centisome position: 67.7

GC content: 61.7

Gene sequence:

>906_bases
ATGACCCTGGAACAACTTCGGATTTTCGTGGCGGTCGCCGAGCGGCAGCATGTCACGGCGGCCGCGCGCGCGCTCAATCT
GGCCCAATCCGCAGCCAGCCATGCGATCGCAACGCTAGAAACCCAGTATGATATCAAATTGTTCGATCGTGTGGGGCGGC
GGATCGAACTCACGGAAGCCGGCACATTATTCCTTGCCGAGGCTCGTGCCGTGCTGGCGCGAGCGGATGCGGCTGAACTC
GCCCTGAGCGAATTCGGGAGTTTGAAACGGGGAACACTCACGCTTCAGGCCAGCCAAACCATCGCTAGCTATTGGCTTCC
CCGCCATCTGGTCGCCTTCCGCCAAGCCTATCCGCAAATCCGTATCCAGCTTGCCATTGGCAATACAGCGCAGGTCGCCG
ATGCCGTCGCCAACGGGACGGCTGAACTCGGCTTCGTGGAAGGGGTTGTGGACAAAGAGCCTTTCGCCAGCTGGCCCGTC
GCGCGGGACCAACTGATCCTGGTTGTTGGGCCGAACCACCCATGGGTCGGGCACGCGCCTCTGACATCTGCGGATCTGAG
GGACAGCGAATGGGTGCTTCGCGAGCCTGGATCGGGCACGAGATCCGTCTTTGAAGAGGCTTTATCTCGTCTCGGTATCG
AACCGAAAGAACTGCGCATCCAGCTGGAATTGCCATCCAACGAGGCCGTGCGTGCGGCGGTGGAAGCGGGCATGGGCGCA
ACAGCCCTTTCTGCCTCGGTTGCCGTGCCAAGCCTTGAGGCTGGTTTGCTGCACGCCGTGGACTTCCGTCTTCCGGAACG
TGAATTTCACGTCCTGCGCCATCGGGAACGCTATGGGAGCCGCGCCGCGGATGCGCTGCTGGCCATGGTCGCACGATCAC
CGACAGGCAAGGGTCAGCGGAATTGA

Upstream 100 bases:

>100_bases
TTAAGCTGGCCCGAAGCGATTAATCTTTCTAATAGATATTTTAGTTATAAATGATCATATAATCAGATTGATTTGCGAGC
TCATAGTCGATGACCCTAAA

Downstream 100 bases:

>100_bases
AGACAACATCCGATCATAGGGTTCGCCTTGGGGTTCATTGAGGTCGTCTCTGTACGAGGCTCGAAGAGCCTCGTACAAGC
ATGGCAATCGGATTGAGCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTLEQLRIFVAVAERQHVTAAARALNLAQSAASHAIATLETQYDIKLFDRVGRRIELTEAGTLFLAEARAVLARADAAEL
ALSEFGSLKRGTLTLQASQTIASYWLPRHLVAFRQAYPQIRIQLAIGNTAQVADAVANGTAELGFVEGVVDKEPFASWPV
ARDQLILVVGPNHPWVGHAPLTSADLRDSEWVLREPGSGTRSVFEEALSRLGIEPKELRIQLELPSNEAVRAAVEAGMGA
TALSASVAVPSLEAGLLHAVDFRLPEREFHVLRHRERYGSRAADALLAMVARSPTGKGQRN

Sequences:

>Translated_301_residues
MTLEQLRIFVAVAERQHVTAAARALNLAQSAASHAIATLETQYDIKLFDRVGRRIELTEAGTLFLAEARAVLARADAAEL
ALSEFGSLKRGTLTLQASQTIASYWLPRHLVAFRQAYPQIRIQLAIGNTAQVADAVANGTAELGFVEGVVDKEPFASWPV
ARDQLILVVGPNHPWVGHAPLTSADLRDSEWVLREPGSGTRSVFEEALSRLGIEPKELRIQLELPSNEAVRAAVEAGMGA
TALSASVAVPSLEAGLLHAVDFRLPEREFHVLRHRERYGSRAADALLAMVARSPTGKGQRN
>Mature_300_residues
TLEQLRIFVAVAERQHVTAAARALNLAQSAASHAIATLETQYDIKLFDRVGRRIELTEAGTLFLAEARAVLARADAAELA
LSEFGSLKRGTLTLQASQTIASYWLPRHLVAFRQAYPQIRIQLAIGNTAQVADAVANGTAELGFVEGVVDKEPFASWPVA
RDQLILVVGPNHPWVGHAPLTSADLRDSEWVLREPGSGTRSVFEEALSRLGIEPKELRIQLELPSNEAVRAAVEAGMGAT
ALSASVAVPSLEAGLLHAVDFRLPEREFHVLRHRERYGSRAADALLAMVARSPTGKGQRN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=35.9154929577465, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=28.8659793814433, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=27.6923076923077, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=24.4827586206897, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790399, Length=250, Percent_Identity=26.8, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788296, Length=242, Percent_Identity=28.099173553719, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=28.6666666666667, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787806, Length=248, Percent_Identity=28.6290322580645, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=26.0377358490566, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=254, Percent_Identity=29.9212598425197, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787128, Length=174, Percent_Identity=32.183908045977, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=199, Percent_Identity=25.1256281407035, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788626, Length=271, Percent_Identity=31.3653136531365, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786401, Length=128, Percent_Identity=32.03125, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789639, Length=137, Percent_Identity=31.3868613138686, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=31.7241379310345, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790262, Length=216, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1789173, Length=136, Percent_Identity=33.0882352941176, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787589, Length=225, Percent_Identity=30.2222222222222, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32632; Mature: 32500

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEQLRIFVAVAERQHVTAAARALNLAQSAASHAIATLETQYDIKLFDRVGRRIELTEA
CCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCEEEEECC
GTLFLAEARAVLARADAAELALSEFGSLKRGTLTLQASQTIASYWLPRHLVAFRQAYPQI
CEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEE
RIQLAIGNTAQVADAVANGTAELGFVEGVVDKEPFASWPVARDQLILVVGPNHPWVGHAP
EEEEEECCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
LTSADLRDSEWVLREPGSGTRSVFEEALSRLGIEPKELRIQLELPSNEAVRAAVEAGMGA
CCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHEEEEEECCCCHHHHHHHHHCCCH
TALSASVAVPSLEAGLLHAVDFRLPEREFHVLRHRERYGSRAADALLAMVARSPTGKGQR
HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
N
C
>Mature Secondary Structure 
TLEQLRIFVAVAERQHVTAAARALNLAQSAASHAIATLETQYDIKLFDRVGRRIELTEA
CHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCEEEEECC
GTLFLAEARAVLARADAAELALSEFGSLKRGTLTLQASQTIASYWLPRHLVAFRQAYPQI
CEEEHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEE
RIQLAIGNTAQVADAVANGTAELGFVEGVVDKEPFASWPVARDQLILVVGPNHPWVGHAP
EEEEEECCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
LTSADLRDSEWVLREPGSGTRSVFEEALSRLGIEPKELRIQLELPSNEAVRAAVEAGMGA
CCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCHHHEEEEEECCCCHHHHHHHHHCCCH
TALSASVAVPSLEAGLLHAVDFRLPEREFHVLRHRERYGSRAADALLAMVARSPTGKGQR
HHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA