| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is nagZ [H]
Identifier: 182679248
GI number: 182679248
Start: 2620834
End: 2622123
Strand: Reverse
Name: nagZ [H]
Synonym: Bind_2290
Alternate gene names: 182679248
Gene position: 2622123-2620834 (Counterclockwise)
Preceding gene: 182679252
Following gene: 182679245
Centisome position: 62.88
GC content: 58.06
Gene sequence:
>1290_bases ATGACCCGATTTATCCATAAACCTTTATCAATATTGGCAGGAGTGTGGGTCACTTTTGCCGCTATTCTTTTTTGGCTCGC TCTCCTGATTAGCGATCTGATCGTCTTTCCTTACCGGTTCATCGCCTGCGCGATACTCTTCACCGTGGGATTGGTCGCGT GCATCATCTTTGTTTTGGTGGGACGTCGTTGGATAGCCGCATTGTTTGCTGTCGTTGGCATGCTCGCGGTGTGGCAAGCC GCTAGACCTTGGATCGATCGGCATTATGTGCTCGCCAACAGGGAGCCGGAAACCGTCGATGTCGAACGCCACTTTGTCGT TGGATACGATAACATCGCAACCATCAGGGAGCTGGTTCGTGACGCCCATATCGGCGGCATTTTCCTGACGCGTCGTAATG TCGAGGGCCGGACACTTACAGAGGTTGCGGCTGAAATCGATGGCCTTCAGTCGATTCGGCGCGAGGCCGGCCTTCCTGGC CTCATCGTTGCGGCCGATCAGGAGGGCGGGCCCGTCTCACATCTCTCACCGCCATTGCCAATCCCGCCAGCCCTGTCCAG CATCGCCGGCCTCCCGTTGGACAAGCGCTTTGAAGCTGCCGAGCAACTCGGCGTCGTTCAAGGTTCCGCTCTGCGAGAGA TCGGCATCACGATGGATCTTGCGCCCGTGTGCGATCTCATGCCCCAGAGCCCTCCCGGCATCTTCGATCGGCACACCCGT ATCGCGGCACGATCGATCTCCGATGATCCGACCATCGCCGCCGTGATCGCCAGCGGCTTCTCAAAGGGCCTTCTTGCCAT GGGTGTGACGCCCACGGCCAAACATTTCCCTGGCCTCGGGCGCGTCACAGCTGACACCCATCTTTTCAGTGCCTCGTTGA ATACGGCCGAGGAGGACCTTCTCAAGACTGATTGGGTCCCGTTCCGCGCGGTTCTCGATATTCCTGGTGCCGCTGTCATG CTGTCCCATGTCTCGCTTGACAATGTCGAGTTTGGCGTCCCCGCGTCACGCTCCAAGCGCGTCATCACCGGCATTCTGCG TGAGCAATGGGGGTTCCGTGGAGTCGCCATCAGCGATGATTTGACAATGGGTGCAGCCCAACATGCCGGCCTATGCCGAG CCGTTGAAGGGGCGTTCAACGCCGGGATCGATCTTTTGCTGGTTTCTTGGGATGCGGATAAGATCTATCCAGCCTTGCGC TGCGGTTTGGATGCGTTGAATGCAGGGCGGCTCGACCGAGCCATGCTGAAGCAAAGTGCACAGCGGCTGGATCAACTTAA AGGCAGATAG
Upstream 100 bases:
>100_bases TGGCTCTATGCCTCTGCCACTATACAGGAGAGCTGTGCAGCGCTAACTAGCGATATCCGGCAAGAACCAGCTTTCTCAAA TGAACAACTTATCTCTAAGA
Downstream 100 bases:
>100_bases CTCCCCCGGCGGCGCGCTACGCATGAGGGCGCTGCGGGCCGGCGCACGGCCTTATGATCGGCCGGTAGGTCCGCGAAGAG CGGTAGGGCGCCTTGGAGAG
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MTRFIHKPLSILAGVWVTFAAILFWLALLISDLIVFPYRFIACAILFTVGLVACIIFVLVGRRWIAALFAVVGMLAVWQA ARPWIDRHYVLANREPETVDVERHFVVGYDNIATIRELVRDAHIGGIFLTRRNVEGRTLTEVAAEIDGLQSIRREAGLPG LIVAADQEGGPVSHLSPPLPIPPALSSIAGLPLDKRFEAAEQLGVVQGSALREIGITMDLAPVCDLMPQSPPGIFDRHTR IAARSISDDPTIAAVIASGFSKGLLAMGVTPTAKHFPGLGRVTADTHLFSASLNTAEEDLLKTDWVPFRAVLDIPGAAVM LSHVSLDNVEFGVPASRSKRVITGILREQWGFRGVAISDDLTMGAAQHAGLCRAVEGAFNAGIDLLLVSWDADKIYPALR CGLDALNAGRLDRAMLKQSAQRLDQLKGR
Sequences:
>Translated_429_residues MTRFIHKPLSILAGVWVTFAAILFWLALLISDLIVFPYRFIACAILFTVGLVACIIFVLVGRRWIAALFAVVGMLAVWQA ARPWIDRHYVLANREPETVDVERHFVVGYDNIATIRELVRDAHIGGIFLTRRNVEGRTLTEVAAEIDGLQSIRREAGLPG LIVAADQEGGPVSHLSPPLPIPPALSSIAGLPLDKRFEAAEQLGVVQGSALREIGITMDLAPVCDLMPQSPPGIFDRHTR IAARSISDDPTIAAVIASGFSKGLLAMGVTPTAKHFPGLGRVTADTHLFSASLNTAEEDLLKTDWVPFRAVLDIPGAAVM LSHVSLDNVEFGVPASRSKRVITGILREQWGFRGVAISDDLTMGAAQHAGLCRAVEGAFNAGIDLLLVSWDADKIYPALR CGLDALNAGRLDRAMLKQSAQRLDQLKGR >Mature_428_residues TRFIHKPLSILAGVWVTFAAILFWLALLISDLIVFPYRFIACAILFTVGLVACIIFVLVGRRWIAALFAVVGMLAVWQAA RPWIDRHYVLANREPETVDVERHFVVGYDNIATIRELVRDAHIGGIFLTRRNVEGRTLTEVAAEIDGLQSIRREAGLPGL IVAADQEGGPVSHLSPPLPIPPALSSIAGLPLDKRFEAAEQLGVVQGSALREIGITMDLAPVCDLMPQSPPGIFDRHTRI AARSISDDPTIAAVIASGFSKGLLAMGVTPTAKHFPGLGRVTADTHLFSASLNTAEEDLLKTDWVPFRAVLDIPGAAVML SHVSLDNVEFGVPASRSKRVITGILREQWGFRGVAISDDLTMGAAQHAGLCRAVEGAFNAGIDLLLVSWDADKIYPALRC GLDALNAGRLDRAMLKQSAQRLDQLKGR
Specific function: Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family. NagZ subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=333, Percent_Identity=31.2312312312312, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1788453, Length=336, Percent_Identity=24.4047619047619, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022956 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3 [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 46421; Mature: 46289
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRFIHKPLSILAGVWVTFAAILFWLALLISDLIVFPYRFIACAILFTVGLVACIIFVLV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRRWIAALFAVVGMLAVWQAARPWIDRHYVLANREPETVDVERHFVVGYDNIATIRELVR HHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCCCEEECCEEEEECCCCHHHHHHHHH DAHIGGIFLTRRNVEGRTLTEVAAEIDGLQSIRREAGLPGLIVAADQEGGPVSHLSPPLP HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC IPPALSSIAGLPLDKRFEAAEQLGVVQGSALREIGITMDLAPVCDLMPQSPPGIFDRHTR CCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCEECHHHHHHHCCCCCCCCHHHHHH IAARSISDDPTIAAVIASGFSKGLLAMGVTPTAKHFPGLGRVTADTHLFSASLNTAEEDL HHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHCCCCCCEEHHHHHHEHHCCHHHHHH LKTDWVPFRAVLDIPGAAVMLSHVSLDNVEFGVPASRSKRVITGILREQWGFRGVAISDD HHCCCCCHHHHHCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEECCC LTMGAAQHAGLCRAVEGAFNAGIDLLLVSWDADKIYPALRCGLDALNAGRLDRAMLKQSA CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHCCCHHHHHHHHHHH QRLDQLKGR HHHHHHCCC >Mature Secondary Structure TRFIHKPLSILAGVWVTFAAILFWLALLISDLIVFPYRFIACAILFTVGLVACIIFVLV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRRWIAALFAVVGMLAVWQAARPWIDRHYVLANREPETVDVERHFVVGYDNIATIRELVR HHHHHHHHHHHHHHHHHHHHHCCHHHCEEEEECCCCCEEECCEEEEECCCCHHHHHHHHH DAHIGGIFLTRRNVEGRTLTEVAAEIDGLQSIRREAGLPGLIVAADQEGGPVSHLSPPLP HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC IPPALSSIAGLPLDKRFEAAEQLGVVQGSALREIGITMDLAPVCDLMPQSPPGIFDRHTR CCHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCEECHHHHHHHCCCCCCCCHHHHHH IAARSISDDPTIAAVIASGFSKGLLAMGVTPTAKHFPGLGRVTADTHLFSASLNTAEEDL HHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHCCCCCCEEHHHHHHEHHCCHHHHHH LKTDWVPFRAVLDIPGAAVMLSHVSLDNVEFGVPASRSKRVITGILREQWGFRGVAISDD HHCCCCCHHHHHCCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEEECCC LTMGAAQHAGLCRAVEGAFNAGIDLLLVSWDADKIYPALRCGLDALNAGRLDRAMLKQSA CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCHHHHCCCHHHHHHHHHHH QRLDQLKGR HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA