| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is yejA [C]
Identifier: 182679157
GI number: 182679157
Start: 2508662
End: 2510482
Strand: Direct
Name: yejA [C]
Synonym: Bind_2194
Alternate gene names: 182679157
Gene position: 2508662-2510482 (Clockwise)
Preceding gene: 182679155
Following gene: 182679158
Centisome position: 60.16
GC content: 58.65
Gene sequence:
>1821_bases ATGCCTTGCTCCTGTTTCAAACCTGTTTTCCTCCTCCTCTTGCTTTGGCAGACATCCTTTGGATTCGCATCGCTTGGAAG GGCCGCAGAAGCCGCGCATGCGATCGCCATGCATGGCGAGCCGGCTCTCTCAGCGGATTTTCCCCATTTTCCCTACGCCA ATCCCAATGCATCGCAGGGCGGCACTCTGCGTCTTGGTTTTCAAGGGACATTCGACAGTCTCAATCCATTCAATCTCAAA GCCGGTTCGACCGCCCAAGGTCTCAACGGCAATATTTTCGAACCCCTCATGACGCGCTCGCTCGACGAGCCTTTCACGCT CTACGGATTGATCGCCGAGTCGATCGAGACCGATGACTCACGCGAGTTCGTCATTTTTCATCTCAACCCCAAGGCGCATT TTTCCGACGGCACACCCATCACGGCAGACGATGTCCTCTTCAGTTTCAACCTGTTGAAAACCCATGGGCGGCCACAGCAT CGCGTCTCCTATGGCATGGTGAAATCAGCCACTGCTCCCGATCCCCTGACTGTCCGCTATGATCTCAATTCCGGGCAAGA CCGGGAAATGCCCCTGATGCTCGCCTTGATGCCCGTTCTGCCCAAACATCTCGTCAATCCAGCGACCTTCGATGAAGCGA CGCTCAATCCGCCGACCGGATCGGGCCCCTATATCCTCACGGAAGTCAAACCGGGCGAGCGTCTCATCCTGCATCGAGAT CCCCATTATTGGGCGGCCGATCTGTCGACACGGCGCGGCCTGTTCAATTTCGAGACGATCACCATTGACTATTTTCGCGA CGCCAACAGCCTGTTCGAAGCTTTCCGGGCGGGCCTCATCGATTTCCGCGAGGAGACCAGCCCCGCACGCTGGATGAAGG CTTATGATTTTCCAGCTCTCACCGAGGGCCGGATCTTCAAGGAAGCTTTGCCCATCGGCGGCCCCAAGGGCATGGAGGGA TTCGTCTTCAATCTGCGGCGCCCCCTCTTCACGGATATCAAGGTTCGCGAGGCGCTCGCCTCCCTCTTCGATTTCGAATG GATCAACACCAATCTTTATGGTGGCCTGTACCGCCGCACACAGAGTTTCTTCGACGAATCGGAATTAGCCTCCACCGGCC GCCCGGCGAGCGAGGCCGAACGGCGCCTGCTCGCGCCGTTTCCCGGCGCGGTGCGTGAGGATATTTTGGAAGGGCGCTGG CATCCACCGCAGACCGACGGCTCAGGGCAGGATCGCACCCAACCTCGCCATGCTCTCGGGCTCCTGCACGAGGCAGGTTA TGATTTGAAGGACGGCCTCCTCTCCAAGGAGGGTAAGCCGCTCTCCTTCGAGATCATGGTCACGGATCGTAATCGAGAGA GGCTGGCGCTTGATTATGCCCGTTCGCTGACCCGGATCGGCGTCGATGCCCATGTCCGCCTGGTCGATGAAGTTCAGTAT CAGCGGCGGCGCCAAAAATTCGATTTCGACATGATGATCGGCAGTTGGATAGCCTCCGCCTCGCCCGGCAATGAGCAGCG GTCACGCTGGGGCTCGAAAAGCGCCGATCAGGAAGCCTCGTTCAATCTTGCCGGTGTCAAATCACCCGCCGTGGATGCGA TGATCAATCATCTCCTCGCCGCACGAACGCATGACGATTTCGTCACAGCCGTACGGGCCTATGATCGTGTTCTGCTTTCA GGCTTTTACGTCGTGCCGCTGTTTCATTCGCCGACACAATGGATCGCCGGAACGACACGGCTCGGCCGGCCCGATGTCCT GCCCCGCTATGGCGCGCCGAGCGGCAGCGCGACCTTGGAAACCTGGTGGATGCGGCCGTAA
Upstream 100 bases:
>100_bases ATTATCTCCTCTTTTCTGGCTTAGTGCCCAATGCTTAATCTTTATCTTTCCTTTGTCTCCTTATCTTCGTCCCACATCCC CCGCTGCGCCGGTTTCCTCG
Downstream 100 bases:
>100_bases AACGGAACGTGCCCGGACGCTTGCGACCAGAAACGCTCTTGGCCTGGTTCCTGCCTCTTCGCTCGAATGCCAAGCCATCG TATAATCAAGCCGTTCCGCT
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 606; Mature: 605
Protein sequence:
>606_residues MPCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQGGTLRLGFQGTFDSLNPFNLK AGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDSREFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQH RVSYGMVKSATAPDPLTVRYDLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPALTEGRIFKEALPIGGPKGMEG FVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRTQSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRW HPPQTDGSGQDRTQPRHALGLLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLAARTHDDFVTAVRAYDRVLLS GFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLETWWMRP
Sequences:
>Translated_606_residues MPCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQGGTLRLGFQGTFDSLNPFNLK AGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDSREFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQH RVSYGMVKSATAPDPLTVRYDLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPALTEGRIFKEALPIGGPKGMEG FVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRTQSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRW HPPQTDGSGQDRTQPRHALGLLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLAARTHDDFVTAVRAYDRVLLS GFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLETWWMRP >Mature_605_residues PCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQGGTLRLGFQGTFDSLNPFNLKA GSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDSREFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQHR VSYGMVKSATAPDPLTVRYDLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRDP HYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPALTEGRIFKEALPIGGPKGMEGF VFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRTQSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRWH PPQTDGSGQDRTQPRHALGLLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQYQ RRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLAARTHDDFVTAVRAYDRVLLSG FYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLETWWMRP
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=599, Percent_Identity=35.2253756260434, Blast_Score=353, Evalue=1e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 67822; Mature: 67690
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQG CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC GTLRLGFQGTFDSLNPFNLKAGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDS CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC REFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQHRVSYGMVKSATAPDPLTVRY CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEE DLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECC PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPAL CCCEECCCHHCCCCEEEEEEEEEEHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC TEGRIFKEALPIGGPKGMEGFVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRT CCCCHHHHHCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH QSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRWHPPQTDGSGQDRTQPRHALG HHHHCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH LLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY HHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLA HHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH ARTHDDFVTAVRAYDRVLLSGFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLE HCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEE TWWMRP EEECCC >Mature Secondary Structure PCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQG CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC GTLRLGFQGTFDSLNPFNLKAGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDS CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC REFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQHRVSYGMVKSATAPDPLTVRY CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEE DLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECC PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPAL CCCEECCCHHCCCCEEEEEEEEEEHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC TEGRIFKEALPIGGPKGMEGFVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRT CCCCHHHHHCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH QSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRWHPPQTDGSGQDRTQPRHALG HHHHCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH LLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY HHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLA HHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH ARTHDDFVTAVRAYDRVLLSGFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLE HCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEE TWWMRP EEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA