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The map label for this gene is ygbK [C]

Identifier: 182679051

GI number: 182679051

Start: 2386129

End: 2387406

Strand: Direct

Name: ygbK [C]

Synonym: Bind_2087

Alternate gene names: 182679051

Gene position: 2386129-2387406 (Clockwise)

Preceding gene: 182679050

Following gene: 182679053

Centisome position: 57.22

GC content: 59.47

Gene sequence:

>1278_bases
ATGAGCTTGCTGCTCGGTTGCATCGCCGATGATTATACAGGCGCGTCCGATCTCGCAAATACACTTGCCCGCAATGGATT
GCGGACGATCCAGACCATCGGCCTGCCTGCGGCCGATCTCGATTTGAAGGATATCGATGCCGCCGTCGTCTCTTTCAAAA
GCCGCTCCATTCCTGCGGACGAGGCCGTCGCCTTGGCCGTCTCCGCGAACCATTGGCTGCGCGAACACGGCGCCAAACAT
GTCCTATTCAAAATCTGTTCGACCTTCGATTCAACCGATCTTGGCAATATCGGTCCAGTCACGGAGGCCTTGCGCAACGC
GGATGCAACGCTGCCAACTCTGGTGACACCGGCTTTTCCCGAGACAGGGCGAACTGTCTATCAAGGCCATCTTTTCGTTG
GTTCCGTGCCGCTCAATGAAAGTCCTCTCAAGGACCATCCGTTGAATCCGATGCATGACGCCAATCTCGTTCGCGTTCTC
GCGCGCCAGAGTCGAGACAAGGTCGGCCTTGTACCTTTGTCCGTCGTCGAACAAGGTGTCGAGGCAGTTCGCACACATCT
CGTCGCTCTAGCCAGTGAAGGCGTGCAAAGCGCAATCATCGACGCGGTTTTCGATCGGCATCTCGAAACCATTGGAATGA
TTGCACTGGAAGCGCCGACATCGACCGGCGCTTCAGGACTCGGCCTTGGCCTGGCCCGCGCGCTCACCGCGTCCAAGCCG
ATCCAAGCTGGCGTGCAGTCACAGAAGGCCTCCACGCCGGTCGCGGGACATGCCGCGATCATTGCCGGAAGCTGCTCGCA
AGCGACTTTGCAGCAAATCGAGGCCGTAGCGGGAGCTATTCCAACCTTGCGCCTGCAACCCGAAGAGCTCATCGCCAGCC
CGGCCCATACGGTCGAACGAGCCCTCTCCTGGGCCCGCCCACAATTGGCATCGGGGCCGGTACTGATCGCCAGCAGTGCC
CCGCCTTCCGAAGTCATTGCCCTGCAAGCCCGCCATGGCAAGGAATCCGGCATCGCAATCGAAAAGGCGCTCGCCGAAAT
CGCCTCGGGACTCGTCAATTCCGGCGTGAAACGGCTTGTCGTCGCGGGGGGCGAAACATCGGGCGCAACGGTGGATCGGC
TGCATGTGCAAGCCTTTTCGATCGGACAGGAAATCGCCCCAGGCGTGCCCATTCTTGAGGTATCCGATCAGGAACATGGC
GCCATGCTGCTCGCTCTCAAATCCGGCAATTTTGGCGGCCGTGATTTCTTCAGCCGAGCGCTTGAACTGATGCAATGA

Upstream 100 bases:

>100_bases
GCTGCGAATACCGCCCGCGCGCCGGCACCTTGGCGGGACTCGATTGGTTCAAACCCTATGCGCGGAGAGAACCCGTGTTG
AGCTTGACGGGAGAACGGTC

Downstream 100 bases:

>100_bases
TCCTGACGCATCCATGCAACATGGCAAGAGGGTTGGTGATCATGCCAATCCTCGACCAATGACGGGAATCAAGTCTCGGT
TTCACGCAGTCACGCGGCCC

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MSLLLGCIADDYTGASDLANTLARNGLRTIQTIGLPAADLDLKDIDAAVVSFKSRSIPADEAVALAVSANHWLREHGAKH
VLFKICSTFDSTDLGNIGPVTEALRNADATLPTLVTPAFPETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVL
ARQSRDKVGLVPLSVVEQGVEAVRTHLVALASEGVQSAIIDAVFDRHLETIGMIALEAPTSTGASGLGLGLARALTASKP
IQAGVQSQKASTPVAGHAAIIAGSCSQATLQQIEAVAGAIPTLRLQPEELIASPAHTVERALSWARPQLASGPVLIASSA
PPSEVIALQARHGKESGIAIEKALAEIASGLVNSGVKRLVVAGGETSGATVDRLHVQAFSIGQEIAPGVPILEVSDQEHG
AMLLALKSGNFGGRDFFSRALELMQ

Sequences:

>Translated_425_residues
MSLLLGCIADDYTGASDLANTLARNGLRTIQTIGLPAADLDLKDIDAAVVSFKSRSIPADEAVALAVSANHWLREHGAKH
VLFKICSTFDSTDLGNIGPVTEALRNADATLPTLVTPAFPETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVL
ARQSRDKVGLVPLSVVEQGVEAVRTHLVALASEGVQSAIIDAVFDRHLETIGMIALEAPTSTGASGLGLGLARALTASKP
IQAGVQSQKASTPVAGHAAIIAGSCSQATLQQIEAVAGAIPTLRLQPEELIASPAHTVERALSWARPQLASGPVLIASSA
PPSEVIALQARHGKESGIAIEKALAEIASGLVNSGVKRLVVAGGETSGATVDRLHVQAFSIGQEIAPGVPILEVSDQEHG
AMLLALKSGNFGGRDFFSRALELMQ
>Mature_424_residues
SLLLGCIADDYTGASDLANTLARNGLRTIQTIGLPAADLDLKDIDAAVVSFKSRSIPADEAVALAVSANHWLREHGAKHV
LFKICSTFDSTDLGNIGPVTEALRNADATLPTLVTPAFPETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVLA
RQSRDKVGLVPLSVVEQGVEAVRTHLVALASEGVQSAIIDAVFDRHLETIGMIALEAPTSTGASGLGLGLARALTASKPI
QAGVQSQKASTPVAGHAAIIAGSCSQATLQQIEAVAGAIPTLRLQPEELIASPAHTVERALSWARPQLASGPVLIASSAP
PSEVIALQARHGKESGIAIEKALAEIASGLVNSGVKRLVVAGGETSGATVDRLHVQAFSIGQEIAPGVPILEVSDQEHGA
MLLALKSGNFGGRDFFSRALELMQ

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=389, Percent_Identity=41.6452442159383, Blast_Score=279, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44156; Mature: 44025

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLLGCIADDYTGASDLANTLARNGLRTIQTIGLPAADLDLKDIDAAVVSFKSRSIPAD
CCEEEEEHHCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
EAVALAVSANHWLREHGAKHVLFKICSTFDSTDLGNIGPVTEALRNADATLPTLVTPAFP
HHEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHCCCCCC
ETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVLARQSRDKVGLVPLSVVEQGV
CCCCEEEECEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
EAVRTHLVALASEGVQSAIIDAVFDRHLETIGMIALEAPTSTGASGLGLGLARALTASKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCC
IQAGVQSQKASTPVAGHAAIIAGSCSQATLQQIEAVAGAIPTLRLQPEELIASPAHTVER
HHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEECHHHHHCCCHHHHHH
ALSWARPQLASGPVLIASSAPPSEVIALQARHGKESGIAIEKALAEIASGLVNSGVKRLV
HHHHCCCCCCCCCEEEECCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
VAGGETSGATVDRLHVQAFSIGQEIAPGVPILEVSDQEHGAMLLALKSGNFGGRDFFSRA
EECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHH
LELMQ
HHHHC
>Mature Secondary Structure 
SLLLGCIADDYTGASDLANTLARNGLRTIQTIGLPAADLDLKDIDAAVVSFKSRSIPAD
CEEEEEHHCCCCCHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCC
EAVALAVSANHWLREHGAKHVLFKICSTFDSTDLGNIGPVTEALRNADATLPTLVTPAFP
HHEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHCCCCCC
ETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVLARQSRDKVGLVPLSVVEQGV
CCCCEEEECEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
EAVRTHLVALASEGVQSAIIDAVFDRHLETIGMIALEAPTSTGASGLGLGLARALTASKP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHCCCC
IQAGVQSQKASTPVAGHAAIIAGSCSQATLQQIEAVAGAIPTLRLQPEELIASPAHTVER
HHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEECHHHHHCCCHHHHHH
ALSWARPQLASGPVLIASSAPPSEVIALQARHGKESGIAIEKALAEIASGLVNSGVKRLV
HHHHCCCCCCCCCEEEECCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
VAGGETSGATVDRLHVQAFSIGQEIAPGVPILEVSDQEHGAMLLALKSGNFGGRDFFSRA
EECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCCCCCHHHHHHH
LELMQ
HHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]