| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
Click here to switch to the map view.
The map label for this gene is atoS [C]
Identifier: 182678949
GI number: 182678949
Start: 2264942
End: 2267485
Strand: Reverse
Name: atoS [C]
Synonym: Bind_1983
Alternate gene names: 182678949
Gene position: 2267485-2264942 (Counterclockwise)
Preceding gene: 182678952
Following gene: 182678948
Centisome position: 54.37
GC content: 58.06
Gene sequence:
>2544_bases ATGACCGATTTCAAAATGCCGGTTCCGATGAAACGCTCCGGCATATCCGGCATGATCTTGCTGTTGTTGACTGTTTTCGT GACAGTGATGGCCGCTTTGTCCTTGCTGCCACGCGAGATGGCTGCCGGTCTCGCTGTCTGGTGCCTGGCCCTCTTCGCGG TGGTCGGCCTTCTCGCGCTTTATGCCTATGCTTGCGGTTGGTTGCGCATTGCGGGACTGAAGCCGGACTTGCACCTGAGC CGTTTGATTTGCGACGAAAGTACCGATGGGCTCGTCGTGACTGATGTGGAAGGATCGCTTCTCTACGGTAATGCGGCTTA TGAGGCCTTGGTCGGCCCTCTGGATTTGTGGCGTGGGCCGGCGGTCGAGCGGCGGTTCGCTGACGTGCCGGAAATCAGGG AGGCGATCTATCGCCTGGCTCAGGCGGGTCGGCAAGGCCGGGCAGGGTTAGAGGAATTGCGACTCAGCCCTGCGCTCATG GGGGGCGCGCCTTTTGGCTGGTATCGGATTGCCGTGCGCCCCCTGTTTTTGAAAGAGGCGCGACCGGCGACGCTCTGGAG ATTCACCGATATTACGCGCGAGCGGGAGCAACAGGAAAAGCTCTTTGGCGAATGGCGTCGTGCTATTGCTTTTCTCGATC AAGCGCCAGCGGGCTTTTTTTCTTCCGATCGGGACGGACGGATCACCTTTTTGAATGCCACGCTGGCGACATGGCTCGAT TATGATGTGACGCCGCGCGAGACGGAAGAGATCGCGCTTTTTCAATTGGATGGACGAGAGACGCGATCAGGTGGCCTCGC GCTCGGGGATTTGATGGCTGGCGATGGGGCCAATGTGCTCGGCGCCAAGAAAGGTGCGCCGGGGGAAGTGCGTTGTGAAC AATTGGATCTCGATCTGAAACGGCGTGAAGGCCGGAGCCTGCCCGTGCGGCTCTTGCACCGGATCGCCTTCGGCGAGGAT GGACGGCCAGAGACATCCTGCACCCTTGTTCTCAATCGGGCGGCGAATGAAGAACCGGCAGAGGGTCTGCGGGGAAACGA GACTCGTTTCGCACGCGTGTTCGATACCACTCCGATCGCTATGGCGATCGTCGATCGCTCCGGCCAGCTCCTGCGGTCCA ATGCTGCTTTCGCTCGTTTCATGCCGGAGGCTCTCGATCGAAACGGCAAAAATCCACCTCGCGCGCTCCAGGCCTCGATT ATCGAGCCTGATCGTGCGGGGCTCGATGAAGCGATTCAGGCAGCGGCGCGGTCGGGAGGCGATATTCCACCGGTCGATGT CACGTTTGTCGGCGCGGAAGAACGCTCAGCCAGATTGTTTGTCGCGAGCGCGAATGAAGGACAAGGCGGCGCGATGATCT ACGCGCTGGATACGACTGAATTGCGGACCTTGCAGAATAATTTCGCGCAATCGCAGAAAATGCAGGCGATTGGTCAGCTC GCCGGTGGCGTAGCGCATGATTTCAACAATGTGTTGACTGCCATCATCGGCTATTCGGATCTTCTGCTTGCCAATCAGCG TCCGACTGATCCCTCCTTCCAGGATATTATGCAGATCAAGCAGAACGCCAATCGGGCGGCGGGCCTAGTGCGTCAATTGC TGGCTTTCTCACGCCGGCAGACCTTGCGCCCGCAAGTGCTCCAGCTTGGTGATGTTCTCTCCGATCTGCAAATGCTGCTG CGCCGCCTCGTCGGGGAGACAATCGAACTTGATCTACGGCATGGCCGCGACCTCTGGCTCGTCAAGGCCGATCTCAATCA GTTCGAACAAGTCATCGTCAATCTCGTCGTCAATGCGCGTGACGCCATGCCGGACGGCGGACGGATTGCCTTGCGCACGC GCAATATCGAACCTGAAGCCTGCGCCGCTTTCAGTGAAAAAACGGTACGGCCCGCCGAATATGTCCTGATCGAGGTGGAA GATAATGGTCAGGGCATTCCCATCGACGTCAAGGATAAGATTTTTGAACCCTTCTTCACCACCAAGGAAGTTGGAAAGGG GACGGGGCTAGGGCTGGCCATGGTCTATGGCATCGTCAAGCAAACGGGAGGCACTGTCTTTTGTGATAGTGTCTTGGGTG TCGGCACGACCTTTTCGATCCTATTGCCGCGATACAAGGAGGAGCATTCAGCCGAAGCCCCGGTGGTGGAGGCGCCAAAG CCCGCCGCCGATCTTACCGGTCGGGGAACGATCCTGCTCGTCGAAGATGAGGAAGCCGTGCGCGCTTTTGGCGCGCGGGC TCTGACCTCACGTGGTTATACCGTGCTACAGGCAGGTTCCGGCTTAGAGGCGTTGGAAGTCGTCGAACAGAATGAGGGCA AGATTGATCTCGTCGTTTCCGATGTCGTGATGCCGGAGATGGATGGTCCCACAATGTTCGGTGAATTGCGTAAGCGGGGC GTCATGGCCAAGGTCATTTTTGTGTCCGGCTATGCCGAGGAGGCTTTCGCCAAAAATCTGCCGGAGGGACAAGAATTTGC GTTTCTACCGAAGCCTTTCTCCCTGAAACAATTGATCGAAGCGGTGAAAGGGCAAACGACCTGA
Upstream 100 bases:
>100_bases TCGGAATCGATCGGACGGGCTCTCGCATGCCCTGAGCGGAACATCTGATTTGTTTTTTAACACGCACCCTGTTTCTGGCA CGAATCGAGGCGATGTCCTT
Downstream 100 bases:
>100_bases TCATCGCGCGGTATAAATTGTGCTCATGACTATACGGACGGCTGTTGGAACATTCTCGAACTTTTCATTCACCTGTGGGG AATGAAAAAATCCGGGAATG
Product: multi-sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 847; Mature: 846
Protein sequence:
>847_residues MTDFKMPVPMKRSGISGMILLLLTVFVTVMAALSLLPREMAAGLAVWCLALFAVVGLLALYAYACGWLRIAGLKPDLHLS RLICDESTDGLVVTDVEGSLLYGNAAYEALVGPLDLWRGPAVERRFADVPEIREAIYRLAQAGRQGRAGLEELRLSPALM GGAPFGWYRIAVRPLFLKEARPATLWRFTDITREREQQEKLFGEWRRAIAFLDQAPAGFFSSDRDGRITFLNATLATWLD YDVTPRETEEIALFQLDGRETRSGGLALGDLMAGDGANVLGAKKGAPGEVRCEQLDLDLKRREGRSLPVRLLHRIAFGED GRPETSCTLVLNRAANEEPAEGLRGNETRFARVFDTTPIAMAIVDRSGQLLRSNAAFARFMPEALDRNGKNPPRALQASI IEPDRAGLDEAIQAAARSGGDIPPVDVTFVGAEERSARLFVASANEGQGGAMIYALDTTELRTLQNNFAQSQKMQAIGQL AGGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGLVRQLLAFSRRQTLRPQVLQLGDVLSDLQMLL RRLVGETIELDLRHGRDLWLVKADLNQFEQVIVNLVVNARDAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVE DNGQGIPIDVKDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPRYKEEHSAEAPVVEAPK PAADLTGRGTILLVEDEEAVRAFGARALTSRGYTVLQAGSGLEALEVVEQNEGKIDLVVSDVVMPEMDGPTMFGELRKRG VMAKVIFVSGYAEEAFAKNLPEGQEFAFLPKPFSLKQLIEAVKGQTT
Sequences:
>Translated_847_residues MTDFKMPVPMKRSGISGMILLLLTVFVTVMAALSLLPREMAAGLAVWCLALFAVVGLLALYAYACGWLRIAGLKPDLHLS RLICDESTDGLVVTDVEGSLLYGNAAYEALVGPLDLWRGPAVERRFADVPEIREAIYRLAQAGRQGRAGLEELRLSPALM GGAPFGWYRIAVRPLFLKEARPATLWRFTDITREREQQEKLFGEWRRAIAFLDQAPAGFFSSDRDGRITFLNATLATWLD YDVTPRETEEIALFQLDGRETRSGGLALGDLMAGDGANVLGAKKGAPGEVRCEQLDLDLKRREGRSLPVRLLHRIAFGED GRPETSCTLVLNRAANEEPAEGLRGNETRFARVFDTTPIAMAIVDRSGQLLRSNAAFARFMPEALDRNGKNPPRALQASI IEPDRAGLDEAIQAAARSGGDIPPVDVTFVGAEERSARLFVASANEGQGGAMIYALDTTELRTLQNNFAQSQKMQAIGQL AGGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGLVRQLLAFSRRQTLRPQVLQLGDVLSDLQMLL RRLVGETIELDLRHGRDLWLVKADLNQFEQVIVNLVVNARDAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVE DNGQGIPIDVKDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPRYKEEHSAEAPVVEAPK PAADLTGRGTILLVEDEEAVRAFGARALTSRGYTVLQAGSGLEALEVVEQNEGKIDLVVSDVVMPEMDGPTMFGELRKRG VMAKVIFVSGYAEEAFAKNLPEGQEFAFLPKPFSLKQLIEAVKGQTT >Mature_846_residues TDFKMPVPMKRSGISGMILLLLTVFVTVMAALSLLPREMAAGLAVWCLALFAVVGLLALYAYACGWLRIAGLKPDLHLSR LICDESTDGLVVTDVEGSLLYGNAAYEALVGPLDLWRGPAVERRFADVPEIREAIYRLAQAGRQGRAGLEELRLSPALMG GAPFGWYRIAVRPLFLKEARPATLWRFTDITREREQQEKLFGEWRRAIAFLDQAPAGFFSSDRDGRITFLNATLATWLDY DVTPRETEEIALFQLDGRETRSGGLALGDLMAGDGANVLGAKKGAPGEVRCEQLDLDLKRREGRSLPVRLLHRIAFGEDG RPETSCTLVLNRAANEEPAEGLRGNETRFARVFDTTPIAMAIVDRSGQLLRSNAAFARFMPEALDRNGKNPPRALQASII EPDRAGLDEAIQAAARSGGDIPPVDVTFVGAEERSARLFVASANEGQGGAMIYALDTTELRTLQNNFAQSQKMQAIGQLA GGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGLVRQLLAFSRRQTLRPQVLQLGDVLSDLQMLLR RLVGETIELDLRHGRDLWLVKADLNQFEQVIVNLVVNARDAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVED NGQGIPIDVKDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPRYKEEHSAEAPVVEAPKP AADLTGRGTILLVEDEEAVRAFGARALTSRGYTVLQAGSGLEALEVVEQNEGKIDLVVSDVVMPEMDGPTMFGELRKRGV MAKVIFVSGYAEEAFAKNLPEGQEFAFLPKPFSLKQLIEAVKGQTT
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=294, Percent_Identity=31.2925170068027, Blast_Score=118, Evalue=2e-27, Organism=Escherichia coli, GI1790436, Length=242, Percent_Identity=33.4710743801653, Blast_Score=109, Evalue=6e-25, Organism=Escherichia coli, GI1788713, Length=478, Percent_Identity=23.2217573221757, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI1790300, Length=308, Percent_Identity=30.5194805194805, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI48994928, Length=377, Percent_Identity=27.0557029177719, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI87081816, Length=280, Percent_Identity=28.2142857142857, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1786600, Length=238, Percent_Identity=27.3109243697479, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI145693157, Length=293, Percent_Identity=24.2320819112628, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1788905, Length=112, Percent_Identity=36.6071428571429, Blast_Score=63, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 92544; Mature: 92412
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFKMPVPMKRSGISGMILLLLTVFVTVMAALSLLPREMAAGLAVWCLALFAVVGLLAL CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAYACGWLRIAGLKPDLHLSRLICDESTDGLVVTDVEGSLLYGNAAYEALVGPLDLWRGP HHHHHHHHEEECCCCCHHHHHHHCCCCCCCEEEEECCCCEEECCHHHHHHHCCHHHHCCC AVERRFADVPEIREAIYRLAQAGRQGRAGLEELRLSPALMGGAPFGWYRIAVRPLFLKEA CHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCCCCEEEEEEEHHHHHCC RPATLWRFTDITREREQQEKLFGEWRRAIAFLDQAPAGFFSSDRDGRITFLNATLATWLD CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHC YDVTPRETEEIALFQLDGRETRSGGLALGDLMAGDGANVLGAKKGAPGEVRCEQLDLDLK CCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCHHH RREGRSLPVRLLHRIAFGEDGRPETSCTLVLNRAANEEPAEGLRGNETRFARVFDTTPIA HCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEE MAIVDRSGQLLRSNAAFARFMPEALDRNGKNPPRALQASIIEPDRAGLDEAIQAAARSGG EEEECCCCHHHHCCCHHHHHCHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCC DIPPVDVTFVGAEERSARLFVASANEGQGGAMIYALDTTELRTLQNNFAQSQKMQAIGQL CCCCCEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH AGGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGLVRQLLAFSRRQ HHHHHHHHHHHHHHHHCHHHHEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH TLRPQVLQLGDVLSDLQMLLRRLVGETIELDLRHGRDLWLVKADLNQFEQVIVNLVVNAR CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHH DAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVEDNGQGIPIDVKDKIFEPFFT HCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC TKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPRYKEEHSAEAPVVEAPK HHHHCCCCCHHHHHHHHHHHHCCCCEEECCHHCCCCHHHHHCCCHHHHCCCCCCCCCCCC PAADLTGRGTILLVEDEEAVRAFGARALTSRGYTVLQAGSGLEALEVVEQNEGKIDLVVS CCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEEEEEE DVVMPEMDGPTMFGELRKRGVMAKVIFVSGYAEEAFAKNLPEGQEFAFLPKPFSLKQLIE CCCCCCCCCCHHHHHHHHCCCEEEEEEEECCHHHHHHHCCCCCCCEEECCCCCCHHHHHH AVKGQTT HHCCCCC >Mature Secondary Structure TDFKMPVPMKRSGISGMILLLLTVFVTVMAALSLLPREMAAGLAVWCLALFAVVGLLAL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAYACGWLRIAGLKPDLHLSRLICDESTDGLVVTDVEGSLLYGNAAYEALVGPLDLWRGP HHHHHHHHEEECCCCCHHHHHHHCCCCCCCEEEEECCCCEEECCHHHHHHHCCHHHHCCC AVERRFADVPEIREAIYRLAQAGRQGRAGLEELRLSPALMGGAPFGWYRIAVRPLFLKEA CHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHCCCCCCCEEEEEEEHHHHHCC RPATLWRFTDITREREQQEKLFGEWRRAIAFLDQAPAGFFSSDRDGRITFLNATLATWLD CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHHHC YDVTPRETEEIALFQLDGRETRSGGLALGDLMAGDGANVLGAKKGAPGEVRCEQLDLDLK CCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCHHH RREGRSLPVRLLHRIAFGEDGRPETSCTLVLNRAANEEPAEGLRGNETRFARVFDTTPIA HCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEE MAIVDRSGQLLRSNAAFARFMPEALDRNGKNPPRALQASIIEPDRAGLDEAIQAAARSGG EEEECCCCHHHHCCCHHHHHCHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHCCC DIPPVDVTFVGAEERSARLFVASANEGQGGAMIYALDTTELRTLQNNFAQSQKMQAIGQL CCCCCEEEEECCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH AGGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGLVRQLLAFSRRQ HHHHHHHHHHHHHHHHCHHHHEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH TLRPQVLQLGDVLSDLQMLLRRLVGETIELDLRHGRDLWLVKADLNQFEQVIVNLVVNAR CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHH DAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVEDNGQGIPIDVKDKIFEPFFT HCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCC TKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPRYKEEHSAEAPVVEAPK HHHHCCCCCHHHHHHHHHHHHCCCCEEECCHHCCCCHHHHHCCCHHHHCCCCCCCCCCCC PAADLTGRGTILLVEDEEAVRAFGARALTSRGYTVLQAGSGLEALEVVEQNEGKIDLVVS CCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCCEEEEEEE DVVMPEMDGPTMFGELRKRGVMAKVIFVSGYAEEAFAKNLPEGQEFAFLPKPFSLKQLIE CCCCCCCCCCHHHHHHHHCCCEEEEEEEECCHHHHHHHCCCCCCCEEECCCCCCHHHHHH AVKGQTT HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA