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The map label for this gene is ygcA [C]

Identifier: 182678785

GI number: 182678785

Start: 2062576

End: 2063868

Strand: Direct

Name: ygcA [C]

Synonym: Bind_1814

Alternate gene names: 182678785

Gene position: 2062576-2063868 (Clockwise)

Preceding gene: 182678784

Following gene: 182678786

Centisome position: 49.46

GC content: 63.19

Gene sequence:

>1293_bases
ATGATCGATCTTTGCGCCCATCTCACCATAGACCGGCTCGGTCAGCGCGGCGAAGGCATTGCCCAAACCGCCGAGGGTCT
CGTCTTTGTACCCTATGCCTTACCGCATGAGACAATCATCGCCGAAATCGACGGCGAGCGCGGCCATCTCGCGGAGATTC
TCACCCCTTCAACCGAACGGATCGAGGCTTTCTGTCCCGCTTTCACCCAATGTGGTGGCTGTGCTGTCCAGACCCTCGCC
ATGGCCTCTTATGCCCAATGGAAGCGCGGCCTCGTCGTCGAGGTTCTACGCCATGCCTGCCCGGACACCAAAATCGCGCC
TCTCGTTGACGCCCATGGGGACGGCCGCAGGCGGGCAACTCTCCACGCGAGGCTTTCCCTCGAAGGGCAAGCTCCTGCAG
GGACAATGCAGGTCGGGTTCATGCGGGCTCGAAGCCACGCGCTGATCGCACTCACTTCCTGCCCCCTGTTCGCGCCCACA
TTGTCTTCGGCCTTGCCCGCCACCTTGGCCCTGGCCCAAACCCTTGCCGCCCTCCTCGGACCCAAAATCAAGCCTTTCGA
TTTCATCGTCACCACGACTTTGACCGGGCTCGATATCGATCTGCGCGGCGCCGGTCCGCTTTCAAAAGCGGTCAACGAGA
AACTGTCCAGCCTCGCCCTGAAGCTGGGACTTGCCCGCCTGTCCAATCACGGCGTCGTGCTGCTCGAACGCGAGACGCCC
TTGGTGCGCATCGGACGCTGGAACGTGGCCTTGCCGCCAGGCGCCTTTCTTCAGGCCACCGAGGCAGGAGAAGCAGCGCT
CGCGAGCCGAGTCGTGGCCGCGCTCGCCGGCCGGCGCAAGATCGCCGATCTCTTCGCGGGCCTCGGAACATTTTCCTTGC
CGCTCGCGGAAAGTGCGCAGGTCCATGCCTTCGATCTCGAACAAGCCCCTCTCACCGCACTCGCCAAGGCCTCGCATGCG
CCGGGCCTGCATCCGGTGGAGGTCGAAAGACGCGATCTGTTTCGGCGTCCGCTCGCCACGGAACTTGCCGGCTATGATGC
AATCGTCTTCGATCCGCCACGCGCAGGTGCCGAGCAGCAGGCTCGCGCCCTCGCCGCTTCTGTGGTGCCCGTCGTCGTTG
CCGTTTCCTGCAATCCGCAAACTTTCGCGCGGGATGCCTCCATTCTGCGGGCCGGAGGCTATGACCTGCGCGAAGTCACA
CCGATCGACCAGTTCCGGCATTCCCCGCATGTGGAACTGATTGGCGTCTTTGAACGCCAGCCGCAAAAGAAAAAGCGTCG
CCTGTTGGGTTGA

Upstream 100 bases:

>100_bases
CTAAACTCGGCTGGCAGAAAGAAGGGATCATTCCCTCCCCCATTACCGGCACCGACGGGAACCAGGAATTTTTGATCGGG
GCGCGACGGACAAAGGCCTG

Downstream 100 bases:

>100_bases
AGGACGCGGCCATGATTGCCGACACAAAGCGTTTTATTCCAAGTCTTGATGAGTGAGTCTCATCAAGACTTGGCCCCCGC
GACGGCGGGGCGGCGGCTTT

Product: putative RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MIDLCAHLTIDRLGQRGEGIAQTAEGLVFVPYALPHETIIAEIDGERGHLAEILTPSTERIEAFCPAFTQCGGCAVQTLA
MASYAQWKRGLVVEVLRHACPDTKIAPLVDAHGDGRRRATLHARLSLEGQAPAGTMQVGFMRARSHALIALTSCPLFAPT
LSSALPATLALAQTLAALLGPKIKPFDFIVTTTLTGLDIDLRGAGPLSKAVNEKLSSLALKLGLARLSNHGVVLLERETP
LVRIGRWNVALPPGAFLQATEAGEAALASRVVAALAGRRKIADLFAGLGTFSLPLAESAQVHAFDLEQAPLTALAKASHA
PGLHPVEVERRDLFRRPLATELAGYDAIVFDPPRAGAEQQARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVT
PIDQFRHSPHVELIGVFERQPQKKKRRLLG

Sequences:

>Translated_430_residues
MIDLCAHLTIDRLGQRGEGIAQTAEGLVFVPYALPHETIIAEIDGERGHLAEILTPSTERIEAFCPAFTQCGGCAVQTLA
MASYAQWKRGLVVEVLRHACPDTKIAPLVDAHGDGRRRATLHARLSLEGQAPAGTMQVGFMRARSHALIALTSCPLFAPT
LSSALPATLALAQTLAALLGPKIKPFDFIVTTTLTGLDIDLRGAGPLSKAVNEKLSSLALKLGLARLSNHGVVLLERETP
LVRIGRWNVALPPGAFLQATEAGEAALASRVVAALAGRRKIADLFAGLGTFSLPLAESAQVHAFDLEQAPLTALAKASHA
PGLHPVEVERRDLFRRPLATELAGYDAIVFDPPRAGAEQQARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVT
PIDQFRHSPHVELIGVFERQPQKKKRRLLG
>Mature_430_residues
MIDLCAHLTIDRLGQRGEGIAQTAEGLVFVPYALPHETIIAEIDGERGHLAEILTPSTERIEAFCPAFTQCGGCAVQTLA
MASYAQWKRGLVVEVLRHACPDTKIAPLVDAHGDGRRRATLHARLSLEGQAPAGTMQVGFMRARSHALIALTSCPLFAPT
LSSALPATLALAQTLAALLGPKIKPFDFIVTTTLTGLDIDLRGAGPLSKAVNEKLSSLALKLGLARLSNHGVVLLERETP
LVRIGRWNVALPPGAFLQATEAGEAALASRVVAALAGRRKIADLFAGLGTFSLPLAESAQVHAFDLEQAPLTALAKASHA
PGLHPVEVERRDLFRRPLATELAGYDAIVFDPPRAGAEQQARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVT
PIDQFRHSPHVELIGVFERQPQKKKRRLLG

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=427, Percent_Identity=27.6346604215457, Blast_Score=138, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR007848
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05175 MTS [H]

EC number: NA

Molecular weight: Translated: 45874; Mature: 45874

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDLCAHLTIDRLGQRGEGIAQTAEGLVFVPYALPHETIIAEIDGERGHLAEILTPSTER
CCCHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCEEEEEECCCCCCCHHHCCCCHHH
IEAFCPAFTQCGGCAVQTLAMASYAQWKRGLVVEVLRHACPDTKIAPLVDAHGDGRRRAT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEECCCCCCEEEE
LHARLSLEGQAPAGTMQVGFMRARSHALIALTSCPLFAPTLSSALPATLALAQTLAALLG
EEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
PKIKPFDFIVTTTLTGLDIDLRGAGPLSKAVNEKLSSLALKLGLARLSNHGVVLLERETP
CCCCCCEEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
LVRIGRWNVALPPGAFLQATEAGEAALASRVVAALAGRRKIADLFAGLGTFSLPLAESAQ
EEEEECEEEECCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCE
VHAFDLEQAPLTALAKASHAPGLHPVEVERRDLFRRPLATELAGYDAIVFDPPRAGAEQQ
EEEEECCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCEEEECCCCCCHHHH
ARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVTPIDQFRHSPHVELIGVFERQ
HHHHHHHHEEEEEEEECCCHHHHHHHHHHCCCCCCHHHCCCHHHHCCCCCEEEEEEHHCC
PQKKKRRLLG
CHHHHHCCCC
>Mature Secondary Structure
MIDLCAHLTIDRLGQRGEGIAQTAEGLVFVPYALPHETIIAEIDGERGHLAEILTPSTER
CCCHHHHHHHHHHCCCCCCHHHHCCCEEEEEECCCCCEEEEEECCCCCCCHHHCCCCHHH
IEAFCPAFTQCGGCAVQTLAMASYAQWKRGLVVEVLRHACPDTKIAPLVDAHGDGRRRAT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEECCCCCCEEEE
LHARLSLEGQAPAGTMQVGFMRARSHALIALTSCPLFAPTLSSALPATLALAQTLAALLG
EEEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
PKIKPFDFIVTTTLTGLDIDLRGAGPLSKAVNEKLSSLALKLGLARLSNHGVVLLERETP
CCCCCCEEEEEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
LVRIGRWNVALPPGAFLQATEAGEAALASRVVAALAGRRKIADLFAGLGTFSLPLAESAQ
EEEEECEEEECCCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCE
VHAFDLEQAPLTALAKASHAPGLHPVEVERRDLFRRPLATELAGYDAIVFDPPRAGAEQQ
EEEEECCCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCHHHHHCCCCEEEECCCCCCHHHH
ARALAASVVPVVVAVSCNPQTFARDASILRAGGYDLREVTPIDQFRHSPHVELIGVFERQ
HHHHHHHHEEEEEEEECCCHHHHHHHHHHCCCCCCHHHCCCHHHHCCCCCEEEEEEHHCC
PQKKKRRLLG
CHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]