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The map label for this gene is erfK [H]

Identifier: 182678754

GI number: 182678754

Start: 2022004

End: 2022603

Strand: Direct

Name: erfK [H]

Synonym: Bind_1783

Alternate gene names: 182678754

Gene position: 2022004-2022603 (Clockwise)

Preceding gene: 182678749

Following gene: 182678756

Centisome position: 48.49

GC content: 58.67

Gene sequence:

>600_bases
ATGTTTCGTTCGCGCTTGGTCCTTACCAGTGCCGCGCTTCTGTTCGGGATGGCTATCTCGTTTCAGGCGCTGGCCTATGA
ATATGACCTCAACGGGCAACCCGTGCCAGATGGTCAAAATTACAGCAATTCGAGGATGGAAGGCCGGCCGCAGGCTGTGG
CTCCCGCCCGTGAGACAGTATCCTATTCGACACGTTACGCCCCAGGAACGATCGTGGTCTCCACGGACGAGCGCCGGCTT
TACTATGTGCTTCCGAATAATCAGGCGATCCGCTACGGAATCGGTGTCGGCCGGCCCGGCTTCGAATGGCATGGTGTCAA
AACGGTCGCGATGAAACGCGAATGGCCATCCTGGACGCCCCCCGCGCAAATGCTGCGCCGCAGACCCGACTTGCCTCGTT
TCATGCCGGGCGGTCCCGATAATCCGCTCGGAGCGCGGGCCCTCTATATCGGCGGTACACTCTACCGCATTCATGGTTCA
AACGAACCCGAAACCATTGGTCAGGCCGTCTCTTCCGGCTGTATTCGCATGACCAACGAAGATGTGACCGACCTTTACAG
CCGGGTCAAAGTCGGCACACGGGTCATCGTTCAACGCTGA

Upstream 100 bases:

>100_bases
GATTGCCAAGGCGCTATTATGGCAGGATTATGATAGTCTCTCTTTCCCCTCAGTGGTAAGATTCTTCGCGCATTGCGAAG
CCTGATCAGGGATGATCCAC

Downstream 100 bases:

>100_bases
CTGAAGAGAAGCTTTGAAAACTGTCCAATCGATGCCAATCATCGATTGGACAGCATGGACGAGTCCGTACCCTTCAAAGT
TGACCAGGACGATCGCGCGT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MFRSRLVLTSAALLFGMAISFQALAYEYDLNGQPVPDGQNYSNSRMEGRPQAVAPARETVSYSTRYAPGTIVVSTDERRL
YYVLPNNQAIRYGIGVGRPGFEWHGVKTVAMKREWPSWTPPAQMLRRRPDLPRFMPGGPDNPLGARALYIGGTLYRIHGS
NEPETIGQAVSSGCIRMTNEDVTDLYSRVKVGTRVIVQR

Sequences:

>Translated_199_residues
MFRSRLVLTSAALLFGMAISFQALAYEYDLNGQPVPDGQNYSNSRMEGRPQAVAPARETVSYSTRYAPGTIVVSTDERRL
YYVLPNNQAIRYGIGVGRPGFEWHGVKTVAMKREWPSWTPPAQMLRRRPDLPRFMPGGPDNPLGARALYIGGTLYRIHGS
NEPETIGQAVSSGCIRMTNEDVTDLYSRVKVGTRVIVQR
>Mature_199_residues
MFRSRLVLTSAALLFGMAISFQALAYEYDLNGQPVPDGQNYSNSRMEGRPQAVAPARETVSYSTRYAPGTIVVSTDERRL
YYVLPNNQAIRYGIGVGRPGFEWHGVKTVAMKREWPSWTPPAQMLRRRPDLPRFMPGGPDNPLGARALYIGGTLYRIHGS
NEPETIGQAVSSGCIRMTNEDVTDLYSRVKVGTRVIVQR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=134, Percent_Identity=46.2686567164179, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787040, Length=134, Percent_Identity=44.0298507462687, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787968, Length=135, Percent_Identity=42.962962962963, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787356, Length=135, Percent_Identity=40.7407407407407, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 22212; Mature: 22212

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRSRLVLTSAALLFGMAISFQALAYEYDLNGQPVPDGQNYSNSRMEGRPQAVAPARETV
CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
SYSTRYAPGTIVVSTDERRLYYVLPNNQAIRYGIGVGRPGFEWHGVKTVAMKREWPSWTP
CCCCCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEECCEEEEEEECCCCCCCC
PAQMLRRRPDLPRFMPGGPDNPLGARALYIGGTLYRIHGSNEPETIGQAVSSGCIRMTNE
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHHCCEEEECCC
DVTDLYSRVKVGTRVIVQR
CHHHHHHHHHHCEEEEEEC
>Mature Secondary Structure
MFRSRLVLTSAALLFGMAISFQALAYEYDLNGQPVPDGQNYSNSRMEGRPQAVAPARETV
CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
SYSTRYAPGTIVVSTDERRLYYVLPNNQAIRYGIGVGRPGFEWHGVKTVAMKREWPSWTP
CCCCCCCCCEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEECCEEEEEEECCCCCCCC
PAQMLRRRPDLPRFMPGGPDNPLGARALYIGGTLYRIHGSNEPETIGQAVSSGCIRMTNE
HHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHHCCEEEECCC
DVTDLYSRVKVGTRVIVQR
CHHHHHHHHHHCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]