| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is pycA [H]
Identifier: 182678301
GI number: 182678301
Start: 1524581
End: 1526587
Strand: Direct
Name: pycA [H]
Synonym: Bind_1318
Alternate gene names: 182678301
Gene position: 1524581-1526587 (Clockwise)
Preceding gene: 182678300
Following gene: 182678302
Centisome position: 36.56
GC content: 58.55
Gene sequence:
>2007_bases ATGTTCAAGAAAATCCTTATCGCCAATCGCGGCGAAATCGCCTGCCGCGTGATCAAAACGGCGCGGCGGCTCGGTATCGC CACGGTTGCTGTCTATTCCGAGGCTGATCGCAATGCGCTGCATGTGCGTATGGCGGATGAAGCTGTGTTCATCGGCGGCG CGGCCGCTTCCGAATCCTATCTGGTGATGGACAAAATCGTCGAGGCTTGCGTCGCGACGGGTGCCGAGGCGGTTCATCCT GGTTATGGCTTCCTGTCGGAGCGCGCTGCCTTTCCCGAGGCGCTTGCCGCCAAAGGCATTGTCTTTATCGGTCCCAATCC CAAGGCGATCGAAGCCATGGGCGATAAGATCCAATCGAAGAAATATGCCCAGGCCGCCGGTGTCTCTGTCGTGCCGGGCT ATTTGGGCGAGATCCTTTCGGCTGATGAGGCGGCGCGCATTGCCGATGACATCGGCTATCCGGTAATGATCAAGGCTTCG GCCGGCGGCGGCGGCAAGGGCATGCGTATCGCTCATGCGCGTGATGAGGTCGTTGAAGGTTTTACGCGGGCTCGCTCGGA AGCCAAATCTTCCTTTGGTGATGATCGCGTCTTCATCGAGAAATTCATCGTTGATCCGCGTCATATCGAAATTCAAGTGC TTGGTGACAAACACGGCAATGTCATTCATCTCGGTGAGCGTGAATGTTCGATCCAGCGCCGCAATCAGAAAGTCATCGAG GAAGCCCCTTCACCGCTGCTCGATACCGCGACGCGTGAAAAAATGGGCGCCGAGGCCGTGGCCTTGGCCAAGGCCGTGGG CTATGATTCCGCGGGAACGGTCGAATTTGTCTGCGGCCAGGATAAGCAATTCTACTTCCTGGAAATGAATACCCGATTGC AGGTGGAGCATCCGGTGACGGAACTGGTCACGGGCCTTGACCTCGTCGAGCAGATGATCCGCATCGCTGCCGGGGAAAAG CTGGCCTTGACCCAGCATGATGTCACTTTGCGCGGTTGGGCCGTCGAAAGCCGTGTCTATGCGGAAGATCCCGCGCGCAA TTTTCTGCCCTCGACAGGCCGGCTCGTGGCCTATCGTCCGCCGGCGGAAGGGCTCGTCGATGGCATTACCATCCGCAACG ATACGGGTGTCTATGAAGGGGCGGAAATCTCGATCTTTTACGATCCGATGATCGCTAAATTCATCACCTATGGGGCGACA CGTCAGGCGGCCGTCGAGGCGCAGGCGCAGGCGCTCGACGCCTTTGTCATCCATGGTATACGCCACAATATTCCGTTCCT GAACAGCGTGATGCGGCATGAACGGTTTCGTTCGGGCAAGCTCTCGACGCAATTCCTGGCTGAAGAATATCCGAACGGGT TTACACCGCATCTGCCGCATGGGGATGAGGTTTTCGCGCTCTCCGCTGTCGCCGCTACGATCGATCATGTCCTGAACGAG CGCAAACGGCATATTTCGGGACAATTGTCGGCCAGCAAGCCAGTCGTCTTCACGCGCGAGCGCAGCGTTCTTTTGGGCGC GGATCGGCACGACATTCGGGTCGAGCCTGGCGTCGAAGGCGTGCGGGTTCATTTCGAGACCAATAATCTCTCTTACTTCT GCCGTTCCTCTTGGCAAGGCGGTGAAACCGTCTGGACCGGCACGATCAATGGCGAAACGGCAGCTGTTCAGGTGCAGCCG ATCCCCAATGGATTCCTGCTCTCGCGGGGCGGCGCCGAGGTCGAGGCGCGCGTCTATACGCGGCGTGAGGCTGATCTCGC CGCGTTCATGCCAGAGAAAGCGCAGGCTGAAGCGGTGAAGGCCTTGCTATGCCCGATGCCGGGTCTCGTGAGGGCCATTC ATGTCGCGCCCGGTCAGGAGGTCAAGGCCGGCGATCCTCTCTGCGTGGTCGAAGCCATGAAAATGGAAAACCTGCTGCGC GCCGATCAGGATACGACGATCAAAAGTGTGCTGGCGAAGGAGGGCGATTCACTCGCCGTCGATGCGATCATTATGGAATT TGCCTGA
Upstream 100 bases:
>100_bases AAAAAACACGACAATATTCCGCTGTAGAAACATGATCGCCCCCGCGTGATGGCGGGTTGATTGACTCGGCGCATACATCA TAAAATTTCCGGAGCGTTCC
Downstream 100 bases:
>100_bases GGATCAGTTCGACAACATATCAAAAAGCGTCTGTATGCGGACGTGGGTGGGTAGTAGTCGTCTTCCAAAATATGTTCCAT TGACACCCAGCATGCCGGAC
Product: carbamoyl-phosphate synthase L chain ATP-binding
Products: NA
Alternate protein names: Pyruvic carboxylase A [H]
Number of amino acids: Translated: 668; Mature: 668
Protein sequence:
>668_residues MFKKILIANRGEIACRVIKTARRLGIATVAVYSEADRNALHVRMADEAVFIGGAAASESYLVMDKIVEACVATGAEAVHP GYGFLSERAAFPEALAAKGIVFIGPNPKAIEAMGDKIQSKKYAQAAGVSVVPGYLGEILSADEAARIADDIGYPVMIKAS AGGGGKGMRIAHARDEVVEGFTRARSEAKSSFGDDRVFIEKFIVDPRHIEIQVLGDKHGNVIHLGERECSIQRRNQKVIE EAPSPLLDTATREKMGAEAVALAKAVGYDSAGTVEFVCGQDKQFYFLEMNTRLQVEHPVTELVTGLDLVEQMIRIAAGEK LALTQHDVTLRGWAVESRVYAEDPARNFLPSTGRLVAYRPPAEGLVDGITIRNDTGVYEGAEISIFYDPMIAKFITYGAT RQAAVEAQAQALDAFVIHGIRHNIPFLNSVMRHERFRSGKLSTQFLAEEYPNGFTPHLPHGDEVFALSAVAATIDHVLNE RKRHISGQLSASKPVVFTRERSVLLGADRHDIRVEPGVEGVRVHFETNNLSYFCRSSWQGGETVWTGTINGETAAVQVQP IPNGFLLSRGGAEVEARVYTRREADLAAFMPEKAQAEAVKALLCPMPGLVRAIHVAPGQEVKAGDPLCVVEAMKMENLLR ADQDTTIKSVLAKEGDSLAVDAIIMEFA
Sequences:
>Translated_668_residues MFKKILIANRGEIACRVIKTARRLGIATVAVYSEADRNALHVRMADEAVFIGGAAASESYLVMDKIVEACVATGAEAVHP GYGFLSERAAFPEALAAKGIVFIGPNPKAIEAMGDKIQSKKYAQAAGVSVVPGYLGEILSADEAARIADDIGYPVMIKAS AGGGGKGMRIAHARDEVVEGFTRARSEAKSSFGDDRVFIEKFIVDPRHIEIQVLGDKHGNVIHLGERECSIQRRNQKVIE EAPSPLLDTATREKMGAEAVALAKAVGYDSAGTVEFVCGQDKQFYFLEMNTRLQVEHPVTELVTGLDLVEQMIRIAAGEK LALTQHDVTLRGWAVESRVYAEDPARNFLPSTGRLVAYRPPAEGLVDGITIRNDTGVYEGAEISIFYDPMIAKFITYGAT RQAAVEAQAQALDAFVIHGIRHNIPFLNSVMRHERFRSGKLSTQFLAEEYPNGFTPHLPHGDEVFALSAVAATIDHVLNE RKRHISGQLSASKPVVFTRERSVLLGADRHDIRVEPGVEGVRVHFETNNLSYFCRSSWQGGETVWTGTINGETAAVQVQP IPNGFLLSRGGAEVEARVYTRREADLAAFMPEKAQAEAVKALLCPMPGLVRAIHVAPGQEVKAGDPLCVVEAMKMENLLR ADQDTTIKSVLAKEGDSLAVDAIIMEFA >Mature_668_residues MFKKILIANRGEIACRVIKTARRLGIATVAVYSEADRNALHVRMADEAVFIGGAAASESYLVMDKIVEACVATGAEAVHP GYGFLSERAAFPEALAAKGIVFIGPNPKAIEAMGDKIQSKKYAQAAGVSVVPGYLGEILSADEAARIADDIGYPVMIKAS AGGGGKGMRIAHARDEVVEGFTRARSEAKSSFGDDRVFIEKFIVDPRHIEIQVLGDKHGNVIHLGERECSIQRRNQKVIE EAPSPLLDTATREKMGAEAVALAKAVGYDSAGTVEFVCGQDKQFYFLEMNTRLQVEHPVTELVTGLDLVEQMIRIAAGEK LALTQHDVTLRGWAVESRVYAEDPARNFLPSTGRLVAYRPPAEGLVDGITIRNDTGVYEGAEISIFYDPMIAKFITYGAT RQAAVEAQAQALDAFVIHGIRHNIPFLNSVMRHERFRSGKLSTQFLAEEYPNGFTPHLPHGDEVFALSAVAATIDHVLNE RKRHISGQLSASKPVVFTRERSVLLGADRHDIRVEPGVEGVRVHFETNNLSYFCRSSWQGGETVWTGTINGETAAVQVQP IPNGFLLSRGGAEVEARVYTRREADLAAFMPEKAQAEAVKALLCPMPGLVRAIHVAPGQEVKAGDPLCVVEAMKMENLLR ADQDTTIKSVLAKEGDSLAVDAIIMEFA
Specific function: Pyruvate carboxylase catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second [H]
COG id: COG4770
COG function: function code I; Acetyl/propionyl-CoA carboxylase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotin carboxylation domain [H]
Homologues:
Organism=Homo sapiens, GI65506442, Length=671, Percent_Identity=50.0745156482861, Blast_Score=619, Evalue=1e-177, Organism=Homo sapiens, GI189095269, Length=671, Percent_Identity=50.0745156482861, Blast_Score=619, Evalue=1e-177, Organism=Homo sapiens, GI295821183, Length=669, Percent_Identity=48.5799701046338, Blast_Score=574, Evalue=1e-163, Organism=Homo sapiens, GI116805327, Length=676, Percent_Identity=43.0473372781065, Blast_Score=507, Evalue=1e-143, Organism=Homo sapiens, GI106049528, Length=450, Percent_Identity=46.4444444444444, Blast_Score=398, Evalue=1e-111, Organism=Homo sapiens, GI106049295, Length=450, Percent_Identity=46.4444444444444, Blast_Score=398, Evalue=1e-111, Organism=Homo sapiens, GI106049292, Length=450, Percent_Identity=46.4444444444444, Blast_Score=398, Evalue=1e-111, Organism=Homo sapiens, GI38679960, Length=515, Percent_Identity=31.6504854368932, Blast_Score=246, Evalue=5e-65, Organism=Homo sapiens, GI38679971, Length=515, Percent_Identity=31.6504854368932, Blast_Score=246, Evalue=5e-65, Organism=Homo sapiens, GI38679974, Length=515, Percent_Identity=31.6504854368932, Blast_Score=246, Evalue=6e-65, Organism=Homo sapiens, GI38679977, Length=515, Percent_Identity=31.6504854368932, Blast_Score=246, Evalue=7e-65, Organism=Homo sapiens, GI38679967, Length=515, Percent_Identity=31.6504854368932, Blast_Score=246, Evalue=7e-65, Organism=Homo sapiens, GI134142062, Length=510, Percent_Identity=31.3725490196078, Blast_Score=234, Evalue=2e-61, Organism=Escherichia coli, GI1789654, Length=452, Percent_Identity=45.575221238938, Blast_Score=384, Evalue=1e-107, Organism=Caenorhabditis elegans, GI17567343, Length=689, Percent_Identity=49.0566037735849, Blast_Score=597, Evalue=1e-171, Organism=Caenorhabditis elegans, GI71987519, Length=675, Percent_Identity=42.0740740740741, Blast_Score=476, Evalue=1e-134, Organism=Caenorhabditis elegans, GI17562816, Length=458, Percent_Identity=45.8515283842795, Blast_Score=391, Evalue=1e-109, Organism=Caenorhabditis elegans, GI133931226, Length=698, Percent_Identity=28.6532951289398, Blast_Score=228, Evalue=1e-59, Organism=Caenorhabditis elegans, GI71997163, Length=706, Percent_Identity=26.628895184136, Blast_Score=207, Evalue=2e-53, Organism=Caenorhabditis elegans, GI71997168, Length=706, Percent_Identity=26.628895184136, Blast_Score=207, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6319685, Length=447, Percent_Identity=46.0850111856823, Blast_Score=394, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6319695, Length=459, Percent_Identity=42.9193899782135, Blast_Score=359, Evalue=1e-100, Organism=Saccharomyces cerevisiae, GI6321376, Length=459, Percent_Identity=42.9193899782135, Blast_Score=345, Evalue=1e-95, Organism=Saccharomyces cerevisiae, GI6324343, Length=744, Percent_Identity=28.3602150537634, Blast_Score=245, Evalue=2e-65, Organism=Saccharomyces cerevisiae, GI6323863, Length=675, Percent_Identity=29.1851851851852, Blast_Score=242, Evalue=2e-64, Organism=Drosophila melanogaster, GI24651757, Length=687, Percent_Identity=41.0480349344978, Blast_Score=487, Evalue=1e-137, Organism=Drosophila melanogaster, GI24651759, Length=651, Percent_Identity=39.4777265745008, Blast_Score=434, Evalue=1e-122, Organism=Drosophila melanogaster, GI281363050, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652224, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652222, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652220, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652218, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652212, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652210, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652214, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI19921944, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI24652216, Length=457, Percent_Identity=47.0459518599562, Blast_Score=402, Evalue=1e-112, Organism=Drosophila melanogaster, GI161076409, Length=497, Percent_Identity=32.3943661971831, Blast_Score=233, Evalue=3e-61, Organism=Drosophila melanogaster, GI161076407, Length=497, Percent_Identity=32.3943661971831, Blast_Score=233, Evalue=3e-61, Organism=Drosophila melanogaster, GI24586460, Length=497, Percent_Identity=32.3943661971831, Blast_Score=233, Evalue=3e-61, Organism=Drosophila melanogaster, GI24586458, Length=497, Percent_Identity=32.3943661971831, Blast_Score=233, Evalue=3e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004549 - InterPro: IPR011761 - InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR011764 - InterPro: IPR005482 - InterPro: IPR005479 - InterPro: IPR005481 - InterPro: IPR013817 - InterPro: IPR016185 - InterPro: IPR011054 [H]
Pfam domain/function: PF02785 Biotin_carb_C; PF00289 CPSase_L_chain; PF02786 CPSase_L_D2 [H]
EC number: =6.4.1.1 [H]
Molecular weight: Translated: 72531; Mature: 72531
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS50975 ATP_GRASP ; PS00866 CPSASE_1 ; PS00867 CPSASE_2 ; PS50979 BC ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKKILIANRGEIACRVIKTARRLGIATVAVYSEADRNALHVRMADEAVFIGGAAASESY CCCEEEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCC LVMDKIVEACVATGAEAVHPGYGFLSERAAFPEALAAKGIVFIGPNPKAIEAMGDKIQSK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHCCEEEECCCCHHHHHHHHHHHHH KYAQAAGVSVVPGYLGEILSADEAARIADDIGYPVMIKASAGGGGKGMRIAHARDEVVEG HHHHHCCCEECCHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCEEEEHHHHHHHHH FTRARSEAKSSFGDDRVFIEKFIVDPRHIEIQVLGDKHGNVIHLGERECSIQRRNQKVIE HHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHH EAPSPLLDTATREKMGAEAVALAKAVGYDSAGTVEFVCGQDKQFYFLEMNTRLQVEHPVT HCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCEEEECCCHH ELVTGLDLVEQMIRIAAGEKLALTQHDVTLRGWAVESRVYAEDPARNFLPSTGRLVAYRP HHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEECEEECCCCHHHCCCCCCCEEEECC PAEGLVDGITIRNDTGVYEGAEISIFYDPMIAKFITYGATRQAAVEAQAQALDAFVIHGI CCCCCCCCEEEECCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH RHNIPFLNSVMRHERFRSGKLSTQFLAEEYPNGFTPHLPHGDEVFALSAVAATIDHVLNE HCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH RKRHISGQLSASKPVVFTRERSVLLGADRHDIRVEPGVEGVRVHFETNNLSYFCRSSWQG HHHHCCCCCCCCCCEEEEECCEEEEECCCCCEEECCCCCEEEEEEEECCEEEEEECCCCC GETVWTGTINGETAAVQVQPIPNGFLLSRGGAEVEARVYTRREADLAAFMPEKAQAEAVK CCEEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEECCCCCHHHHCCCHHHHHHHH ALLCPMPGLVRAIHVAPGQEVKAGDPLCVVEAMKMENLLRADQDTTIKSVLAKEGDSLAV HHHCCCCHHHHEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEE DAIIMEFA EHEEEECC >Mature Secondary Structure MFKKILIANRGEIACRVIKTARRLGIATVAVYSEADRNALHVRMADEAVFIGGAAASESY CCCEEEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCC LVMDKIVEACVATGAEAVHPGYGFLSERAAFPEALAAKGIVFIGPNPKAIEAMGDKIQSK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHHCCEEEECCCCHHHHHHHHHHHHH KYAQAAGVSVVPGYLGEILSADEAARIADDIGYPVMIKASAGGGGKGMRIAHARDEVVEG HHHHHCCCEECCHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCEEEEHHHHHHHHH FTRARSEAKSSFGDDRVFIEKFIVDPRHIEIQVLGDKHGNVIHLGERECSIQRRNQKVIE HHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHHHH EAPSPLLDTATREKMGAEAVALAKAVGYDSAGTVEFVCGQDKQFYFLEMNTRLQVEHPVT HCCCCHHHHHHHHHHCHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCEEEECCCHH ELVTGLDLVEQMIRIAAGEKLALTQHDVTLRGWAVESRVYAEDPARNFLPSTGRLVAYRP HHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEECEEECCCCHHHCCCCCCCEEEECC PAEGLVDGITIRNDTGVYEGAEISIFYDPMIAKFITYGATRQAAVEAQAQALDAFVIHGI CCCCCCCCEEEECCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH RHNIPFLNSVMRHERFRSGKLSTQFLAEEYPNGFTPHLPHGDEVFALSAVAATIDHVLNE HCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHH RKRHISGQLSASKPVVFTRERSVLLGADRHDIRVEPGVEGVRVHFETNNLSYFCRSSWQG HHHHCCCCCCCCCCEEEEECCEEEEECCCCCEEECCCCCEEEEEEEECCEEEEEECCCCC GETVWTGTINGETAAVQVQPIPNGFLLSRGGAEVEARVYTRREADLAAFMPEKAQAEAVK CCEEEEEEECCCEEEEEEEECCCCEEEECCCCCEEEEEEECCCCCHHHHCCCHHHHHHHH ALLCPMPGLVRAIHVAPGQEVKAGDPLCVVEAMKMENLLRADQDTTIKSVLAKEGDSLAV HHHCCCCHHHHEEECCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEE DAIIMEFA EHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463; 9478969 [H]