Click here to switch to the map view.

The map label for this gene is 182678206

Identifier: 182678206

GI number: 182678206

Start: 1417764

End: 1418330

Strand: Direct

Name: 182678206

Synonym: Bind_1221

Alternate gene names: NA

Gene position: 1417764-1418330 (Clockwise)

Preceding gene: 182678198

Following gene: 182678207

Centisome position: 34.0

GC content: 58.38

Gene sequence:

>567_bases
ATGGATAGGCCTTTGCAGATCGTTTTCCGTGACCTTGAGCACTCCGCCTCTCTTGAACATTTGATTCGAGAACGTGCCCA
GCGCCTTGAGCACCTGTTTCGCCATATTATGGGCATGCGCGCCGTCGTCAGTCCCGCGCAAGGGTCCGAAACGGCGAAGA
AAGCCTTGGCTTTGACGATTGAGGTGGAAGTACCCGGCCGTCCGTTGTTGATTGGGAAAGCGGAAGAGGCGAGGCACGAT
TCGAAAGGCGTTCCGATGGCGCTCGTGAAACATGCTTTCGAGGCCGTGCATCGCCAGCTCGACGCTATCGCCGATATTCG
GCGCGGTCAGGTCAAACACCATGAGGGCATGGGCGAGACGGGTGTGATCAGCAAGCTGTTTCCGCAGCAGAATTACGGGT
TTATCGAAGTCAGGGGAGCCGGCGATCTGTATTTCACCCGCAACGCCGTGCAACGCGGTGACTTTGATTCCATGGAGGTC
GGCAATCAGGTCGTGATTACGCGTGCGACGACGGAAGGCCCGATGGGCCCGCAGGCGAGTTCCGTGCGGCGCGTCGAAAG
TCTCTGA

Upstream 100 bases:

>100_bases
GCCGGCCTGCCAAGGCAATTCTCTAAGGCAAATTCAGGGGAATTTGTCGAGAAGAGAAACGGGAAGAGGCTGGCCGGCCG
ATCGCTAAAGGAGCATATGA

Downstream 100 bases:

>100_bases
TGAGATGTTTGCGTGAAAGGATGAATAGCCGAGGTGGGGATGATCATCCCCACCTTTATTTTTGAGCGTGACCACCTCAC
GCCCAAGGGGGCGGCAAGTT

Product: cold-shock protein DNA-binding

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDRPLQIVFRDLEHSASLEHLIRERAQRLEHLFRHIMGMRAVVSPAQGSETAKKALALTIEVEVPGRPLLIGKAEEARHD
SKGVPMALVKHAFEAVHRQLDAIADIRRGQVKHHEGMGETGVISKLFPQQNYGFIEVRGAGDLYFTRNAVQRGDFDSMEV
GNQVVITRATTEGPMGPQASSVRRVESL

Sequences:

>Translated_188_residues
MDRPLQIVFRDLEHSASLEHLIRERAQRLEHLFRHIMGMRAVVSPAQGSETAKKALALTIEVEVPGRPLLIGKAEEARHD
SKGVPMALVKHAFEAVHRQLDAIADIRRGQVKHHEGMGETGVISKLFPQQNYGFIEVRGAGDLYFTRNAVQRGDFDSMEV
GNQVVITRATTEGPMGPQASSVRRVESL
>Mature_188_residues
MDRPLQIVFRDLEHSASLEHLIRERAQRLEHLFRHIMGMRAVVSPAQGSETAKKALALTIEVEVPGRPLLIGKAEEARHD
SKGVPMALVKHAFEAVHRQLDAIADIRRGQVKHHEGMGETGVISKLFPQQNYGFIEVRGAGDLYFTRNAVQRGDFDSMEV
GNQVVITRATTEGPMGPQASSVRRVESL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20908; Mature: 20908

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRPLQIVFRDLEHSASLEHLIRERAQRLEHLFRHIMGMRAVVSPAQGSETAKKALALTI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEE
EVEVPGRPLLIGKAEEARHDSKGVPMALVKHAFEAVHRQLDAIADIRRGQVKHHEGMGET
EEECCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
GVISKLFPQQNYGFIEVRGAGDLYFTRNAVQRGDFDSMEVGNQVVITRATTEGPMGPQAS
CHHHHHCCCCCCCEEEEECCCCEEEEHHHHHCCCCCCHHCCCEEEEEEECCCCCCCCCHH
SVRRVESL
HHHHHHCC
>Mature Secondary Structure
MDRPLQIVFRDLEHSASLEHLIRERAQRLEHLFRHIMGMRAVVSPAQGSETAKKALALTI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEEE
EVEVPGRPLLIGKAEEARHDSKGVPMALVKHAFEAVHRQLDAIADIRRGQVKHHEGMGET
EEECCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
GVISKLFPQQNYGFIEVRGAGDLYFTRNAVQRGDFDSMEVGNQVVITRATTEGPMGPQAS
CHHHHHCCCCCCCEEEEECCCCEEEEHHHHHCCCCCCHHCCCEEEEEEECCCCCCCCCHH
SVRRVESL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA