| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is 182677952
Identifier: 182677952
GI number: 182677952
Start: 1102512
End: 1104833
Strand: Direct
Name: 182677952
Synonym: Bind_0965
Alternate gene names: NA
Gene position: 1102512-1104833 (Clockwise)
Preceding gene: 182677951
Following gene: 182677953
Centisome position: 26.44
GC content: 52.84
Gene sequence:
>2322_bases ATGTTTGCTCCCCTTGAGCACACTGGTGCAATTGCCAAATCGCCAGCCTCTTCACCTCGCCATAAGAGAAAAAAGCATAT TACTCCCTTGATCGTGGGACTGGGACTTGTGCCAAGTTCCTGTCTGGCACAGGCGACACCATCCAATCTGCCAACCATCG AAGTCGTTGGTAAACGTGACGAGCCACCGATGAACCCTATCGACCATACAGCGATGGGGCATGAGGTGAGTGGCGAACGC CTCGCCAGCAAGAGAGTTATTTCGCCCGATACGGCACTCTTGCTGAAAGAGGTGCCGGGCATAAGCCTCGCCCAGGGAGG CGGCCTATCAAGCCTGCCGGTCATTCATGGCCTCAATGATGACCGCAATGCCATTGAGATCGGCGGCATATCGATCACTT CAGCCTGCGGCAACCATATGAATCCACCACTATCCTATATCGACCCGAGTAATATCTCTAAAATCGAAGTCCTGACGGCG CTTATTCCTGTCAGCAAAGGCGGCGATTCCATCGGTGGGTCAATCATTGTGACCCCGCGCGAGCCTATCTTTGCGCCTCC TGTCCCCACGCAAGTATCAGTAACTCAGGACAACTTGCCAATTCTGGCTTCGGATAATACACCCGTTTTCAGCGGTTCCC TGTCGCTCTTCTATCGTTCGAACAATAAAAATCCGACCATTGCCGGAACGGCATCAGCCGCGACTGAGCATTTCAGTGTC AATTATACGGGCGCTTGGACCAAGGCATCGAATTATCACGCAGGTGGTGGCGTCGAGGTCCCCTCGACAAGCTTTGCGGC GCAAAACCATTCCGCAACCATCGCCTATCGCAAAGAGGATCAATTCATTGCGCTCCGTGCCGCCTATCAGGATATTCCCT ACCAGGGCTTCGTCAATCAGCGCATGGATATGCTGGGAAACAAATCTCTGAATTTCGACTTAACTTACAAAGGTGGCTTC GACTGGGGACGTGCCGAGGCCAATGCCTATTACCAACATACACGGCATTACATGAATTTTCTAGCTGACAAGAACGGTGG CATCGAAGCAACATCAACGACCGGAATGCCGATGTATACGAGTGGAACGGATTTCGGCTATAGGTTCAAGAGCGAGATTC TAGCCAGCCAGATTGATAGCATCCGAATCGGTAATGAGTTTCACGGACAATCGCTCAATGACTGGTGGCCACCCGTCGCT GGTTCCACGCCCAGCATGGGTTCCATGTCTATGAGCATGAGCAGCATGATGTGCTGCGAAACGTTCCAGAACATCAATAA TGGTACACGTGACAGGCTTGGAACCTACGTCGAATGGGAGAGAAGCTGGACACAAAGCTGGTCGACCCTGATCGGGATAC GTAATGATCTCGTCTGGACCAATACGCAGAATGTCGAGGGGTACAATACCATGATGTATGGTGCAGATGCTGCTCGATTC AATGCCTCCAACCATGCCCGCATGGATATCAATTTTGATGTGACAGCGCTCGTGCGTTTTGCTCCTGACGCCGGCAGCCT CATCGAGGCCGGCTACACCCGCAAGACACGCTCCCCCAGTCTTTACGAACGTTATACGTGGTCAACGAATGCCATGGCTT CGGAAATGAACAACTGGTTTGGTGACGGTAACGGTTACGTCGGCAACATTGCCCTTAAACCAGAGGTTGCGCATACGTTC AGTATCAGTGCGAGCTGGCGGGACGCGGTCGAAGGAGGTTTTGAGGCGAAGGTCACACCCTATTACATGCATATCGAAAA CTATATTGACGTCGATAAGCTGGGCGTGCTCGGCACTGGCTCCGGCCAGGTCAATCTGCTGCAATTCGCCAATCATGATG CTGAAATTTTTGGTGTCGACTTTTCGGGAAGAGCTCGCCTGTTCCGTTCAGAGGATGCTGGCACTTTGACGCTCACGGGT GTTGCAAGCTATACACGCGGAAGGCGCCTCGATGACAGCGGCAGCCTCTATCATATGATGCCGATGAACGGCAAAGTCGC GATCGAGCATCAGATCCCGTTGCTCGGAGGTGTTCTGACAACAGCTCTCGAAGGAGAAGCAGTTGCGGCAAAGACGAATG TTCAGACCCTGCGTCTCGAACCGCAAACCCCCGCATATGGCCTGATGAATGTTCGCACCGCCTTTGAATTCGCCAATCTG CGGTTTGATGCCGGCGTCGAAAATCTCTTCGACCGGCTGTATTATTCACCACTCGGCGGCGTCGATATTGCCAGCTACAA GGCCGGTCTTAATAGCGTCCTACAAACGCCTGTTGCAGGAATAGGCCGCACGATCTATGGCGGCATGACCATACGCTTCT GA
Upstream 100 bases:
>100_bases CTTCATCGATCGTAAGCGGCGACCGCGTGCACACCCTGCATGCGCATGAACGCTCGCCGCGAGATAGGGAAGGGATTGAG TCAATTCAAATGAGACATGT
Downstream 100 bases:
>100_bases TAAAGTAGGCGGGCGTGCCGCAAAATTGGCCTGTTGACACAGATCAGCGTCAACAGGCCTGATCTTTATGCTTTATTGAC CGCTTGCGATTTGGAAGACT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB Dependent Receptor; NB-Dependent Receptor Protein; NB-Dependent Receptor Domain Protein; Outer Membrane Protein; NB-Dependent Receptor Plug; Outer Membrane Insertion C-Terminal Signal; Outer Membrane Receptor Protein; IMP Dehydrogenase/GMP Reductase; Outer Membrane Protein NosA; NB-Dependent Copper Receptor Protein; Outer Membrane Protein C; Iron Complex Outermembrane Recepter Protein; Nb-Dependent Receptor
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MFAPLEHTGAIAKSPASSPRHKRKKHITPLIVGLGLVPSSCLAQATPSNLPTIEVVGKRDEPPMNPIDHTAMGHEVSGER LASKRVISPDTALLLKEVPGISLAQGGGLSSLPVIHGLNDDRNAIEIGGISITSACGNHMNPPLSYIDPSNISKIEVLTA LIPVSKGGDSIGGSIIVTPREPIFAPPVPTQVSVTQDNLPILASDNTPVFSGSLSLFYRSNNKNPTIAGTASAATEHFSV NYTGAWTKASNYHAGGGVEVPSTSFAAQNHSATIAYRKEDQFIALRAAYQDIPYQGFVNQRMDMLGNKSLNFDLTYKGGF DWGRAEANAYYQHTRHYMNFLADKNGGIEATSTTGMPMYTSGTDFGYRFKSEILASQIDSIRIGNEFHGQSLNDWWPPVA GSTPSMGSMSMSMSSMMCCETFQNINNGTRDRLGTYVEWERSWTQSWSTLIGIRNDLVWTNTQNVEGYNTMMYGADAARF NASNHARMDINFDVTALVRFAPDAGSLIEAGYTRKTRSPSLYERYTWSTNAMASEMNNWFGDGNGYVGNIALKPEVAHTF SISASWRDAVEGGFEAKVTPYYMHIENYIDVDKLGVLGTGSGQVNLLQFANHDAEIFGVDFSGRARLFRSEDAGTLTLTG VASYTRGRRLDDSGSLYHMMPMNGKVAIEHQIPLLGGVLTTALEGEAVAAKTNVQTLRLEPQTPAYGLMNVRTAFEFANL RFDAGVENLFDRLYYSPLGGVDIASYKAGLNSVLQTPVAGIGRTIYGGMTIRF
Sequences:
>Translated_773_residues MFAPLEHTGAIAKSPASSPRHKRKKHITPLIVGLGLVPSSCLAQATPSNLPTIEVVGKRDEPPMNPIDHTAMGHEVSGER LASKRVISPDTALLLKEVPGISLAQGGGLSSLPVIHGLNDDRNAIEIGGISITSACGNHMNPPLSYIDPSNISKIEVLTA LIPVSKGGDSIGGSIIVTPREPIFAPPVPTQVSVTQDNLPILASDNTPVFSGSLSLFYRSNNKNPTIAGTASAATEHFSV NYTGAWTKASNYHAGGGVEVPSTSFAAQNHSATIAYRKEDQFIALRAAYQDIPYQGFVNQRMDMLGNKSLNFDLTYKGGF DWGRAEANAYYQHTRHYMNFLADKNGGIEATSTTGMPMYTSGTDFGYRFKSEILASQIDSIRIGNEFHGQSLNDWWPPVA GSTPSMGSMSMSMSSMMCCETFQNINNGTRDRLGTYVEWERSWTQSWSTLIGIRNDLVWTNTQNVEGYNTMMYGADAARF NASNHARMDINFDVTALVRFAPDAGSLIEAGYTRKTRSPSLYERYTWSTNAMASEMNNWFGDGNGYVGNIALKPEVAHTF SISASWRDAVEGGFEAKVTPYYMHIENYIDVDKLGVLGTGSGQVNLLQFANHDAEIFGVDFSGRARLFRSEDAGTLTLTG VASYTRGRRLDDSGSLYHMMPMNGKVAIEHQIPLLGGVLTTALEGEAVAAKTNVQTLRLEPQTPAYGLMNVRTAFEFANL RFDAGVENLFDRLYYSPLGGVDIASYKAGLNSVLQTPVAGIGRTIYGGMTIRF >Mature_773_residues MFAPLEHTGAIAKSPASSPRHKRKKHITPLIVGLGLVPSSCLAQATPSNLPTIEVVGKRDEPPMNPIDHTAMGHEVSGER LASKRVISPDTALLLKEVPGISLAQGGGLSSLPVIHGLNDDRNAIEIGGISITSACGNHMNPPLSYIDPSNISKIEVLTA LIPVSKGGDSIGGSIIVTPREPIFAPPVPTQVSVTQDNLPILASDNTPVFSGSLSLFYRSNNKNPTIAGTASAATEHFSV NYTGAWTKASNYHAGGGVEVPSTSFAAQNHSATIAYRKEDQFIALRAAYQDIPYQGFVNQRMDMLGNKSLNFDLTYKGGF DWGRAEANAYYQHTRHYMNFLADKNGGIEATSTTGMPMYTSGTDFGYRFKSEILASQIDSIRIGNEFHGQSLNDWWPPVA GSTPSMGSMSMSMSSMMCCETFQNINNGTRDRLGTYVEWERSWTQSWSTLIGIRNDLVWTNTQNVEGYNTMMYGADAARF NASNHARMDINFDVTALVRFAPDAGSLIEAGYTRKTRSPSLYERYTWSTNAMASEMNNWFGDGNGYVGNIALKPEVAHTF SISASWRDAVEGGFEAKVTPYYMHIENYIDVDKLGVLGTGSGQVNLLQFANHDAEIFGVDFSGRARLFRSEDAGTLTLTG VASYTRGRRLDDSGSLYHMMPMNGKVAIEHQIPLLGGVLTTALEGEAVAAKTNVQTLRLEPQTPAYGLMNVRTAFEFANL RFDAGVENLFDRLYYSPLGGVDIASYKAGLNSVLQTPVAGIGRTIYGGMTIRF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83928; Mature: 83928
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFAPLEHTGAIAKSPASSPRHKRKKHITPLIVGLGLVPSSCLAQATPSNLPTIEVVGKRD CCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCHHHHHCCCCCCCCEEEEECCCC EPPMNPIDHTAMGHEVSGERLASKRVISPDTALLLKEVPGISLAQGGGLSSLPVIHGLND CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEECCCC DRNAIEIGGISITSACGNHMNPPLSYIDPSNISKIEVLTALIPVSKGGDSIGGSIIVTPR CCCEEEECCEEEEHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECC EPIFAPPVPTQVSVTQDNLPILASDNTPVFSGSLSLFYRSNNKNPTIAGTASAATEHFSV CCCCCCCCCCEEEEECCCCCEEECCCCCEEECCEEEEEECCCCCCEEEECCCCCCEEEEE NYTGAWTKASNYHAGGGVEVPSTSFAAQNHSATIAYRKEDQFIALRAAYQDIPYQGFVNQ EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHHHCCCCCHHHHH RMDMLGNKSLNFDLTYKGGFDWGRAEANAYYQHTRHYMNFLADKNGGIEATSTTGMPMYT HHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE SGTDFGYRFKSEILASQIDSIRIGNEFHGQSLNDWWPPVAGSTPSMGSMSMSMSSMMCCE CCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH TFQNINNGTRDRLGTYVEWERSWTQSWSTLIGIRNDLVWTNTQNVEGYNTMMYGADAARF HHHHCCCCCHHHCCCEEEEHHHHHHHHHHHHEECCCEEEECCCCCCCCEEEEECCCHHEE NASNHARMDINFDVTALVRFAPDAGSLIEAGYTRKTRSPSLYERYTWSTNAMASEMNNWF CCCCCEEEEECCCEEEEEEECCCCCCHHHCCCCCCCCCCCHHHEEECCCHHHHHHHHHHC GDGNGYVGNIALKPEVAHTFSISASWRDAVEGGFEAKVTPYYMHIENYIDVDKLGVLGTG CCCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCCCCHHHCCEEECC SGQVNLLQFANHDAEIFGVDFSGRARLFRSEDAGTLTLTGVASYTRGRRLDDSGSLYHMM CCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEEHHHHCCCCCCCCCCEEEEE PMNGKVAIEHQIPLLGGVLTTALEGEAVAAKTNVQTLRLEPQTPAYGLMNVRTAFEFANL CCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHCE RFDAGVENLFDRLYYSPLGGVDIASYKAGLNSVLQTPVAGIGRTIYGGMTIRF EECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHCCCEEECCEEEEC >Mature Secondary Structure MFAPLEHTGAIAKSPASSPRHKRKKHITPLIVGLGLVPSSCLAQATPSNLPTIEVVGKRD CCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCHHHHHCCCCCCCCEEEEECCCC EPPMNPIDHTAMGHEVSGERLASKRVISPDTALLLKEVPGISLAQGGGLSSLPVIHGLND CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHCCCCEEECCCCCCCCCEEECCCC DRNAIEIGGISITSACGNHMNPPLSYIDPSNISKIEVLTALIPVSKGGDSIGGSIIVTPR CCCEEEECCEEEEHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECC EPIFAPPVPTQVSVTQDNLPILASDNTPVFSGSLSLFYRSNNKNPTIAGTASAATEHFSV CCCCCCCCCCEEEEECCCCCEEECCCCCEEECCEEEEEECCCCCCEEEECCCCCCEEEEE NYTGAWTKASNYHAGGGVEVPSTSFAAQNHSATIAYRKEDQFIALRAAYQDIPYQGFVNQ EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHHHCCCCCHHHHH RMDMLGNKSLNFDLTYKGGFDWGRAEANAYYQHTRHYMNFLADKNGGIEATSTTGMPMYT HHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEE SGTDFGYRFKSEILASQIDSIRIGNEFHGQSLNDWWPPVAGSTPSMGSMSMSMSSMMCCE CCCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH TFQNINNGTRDRLGTYVEWERSWTQSWSTLIGIRNDLVWTNTQNVEGYNTMMYGADAARF HHHHCCCCCHHHCCCEEEEHHHHHHHHHHHHEECCCEEEECCCCCCCCEEEEECCCHHEE NASNHARMDINFDVTALVRFAPDAGSLIEAGYTRKTRSPSLYERYTWSTNAMASEMNNWF CCCCCEEEEECCCEEEEEEECCCCCCHHHCCCCCCCCCCCHHHEEECCCHHHHHHHHHHC GDGNGYVGNIALKPEVAHTFSISASWRDAVEGGFEAKVTPYYMHIENYIDVDKLGVLGTG CCCCCEEEEEEECCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCCCCHHHCCEEECC SGQVNLLQFANHDAEIFGVDFSGRARLFRSEDAGTLTLTGVASYTRGRRLDDSGSLYHMM CCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEEEEHHHHCCCCCCCCCCEEEEE PMNGKVAIEHQIPLLGGVLTTALEGEAVAAKTNVQTLRLEPQTPAYGLMNVRTAFEFANL CCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHCE RFDAGVENLFDRLYYSPLGGVDIASYKAGLNSVLQTPVAGIGRTIYGGMTIRF EECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHHHCCCEEECCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA