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The map label for this gene is ycbB [H]

Identifier: 182677877

GI number: 182677877

Start: 1006360

End: 1007730

Strand: Direct

Name: ycbB [H]

Synonym: Bind_0884

Alternate gene names: 182677877

Gene position: 1006360-1007730 (Clockwise)

Preceding gene: 182677876

Following gene: 182677885

Centisome position: 24.13

GC content: 56.67

Gene sequence:

>1371_bases
GTGACGAACGCTTTTTTCTCCCCGGCAAGGTCTTTGTTGCCTTCCCTTTCGCTTGCGCCAAAAATCGAGAGCAAGCGGCA
GCGGAATGATGCCAAAATCCTGCTTGCCATGGGTCTTTGCCTCTCACAGCTTCCCTTGCAAGTTTCCTCGGCCTTGGCTG
GACCCTATGGCAGCCAGGCCGAATGGGCGCAGCGCTATGACACGGATGCCAATCTGGCTGTCCTGCGCTCCAACGTGCCG
GTGCTTTCGGTCCAGACGTTGAACGCGACCGAGCAAGCGATCGAAACCTATCGCAACATCGTCGCGCGGGGTGGTTGGAA
TCGTGTGTCGGCCAGCGCCACGCTGAAACTCGGCGCCAATAATGCTGCCGTCACCGAATTACGCAAACGGTTGATCGAAA
CCGGCGATCTCGATGCTTCGGCCGGCACCTCGCCGATCTTCGATTCCTATGTCGATGCCGGCGTCAGGCATTTCCAGGCG
CGCCATGGCCTGGCCGAAACAGGCATCGTCAACCGCGAGACCGTGACGGCGATGAACGTGCCTGCCGATGTGCGGTTGCA
TCAGCTCGAGGTCAATCTCGTGCGGTTGCGGTCTTATAGCGGCAATCTCGGCGAACGATTCGTTATGGCGAATATTCCGG
CCATGGCGGTCGAAACCGTTGAGAATGGTGTCGTCGCAACGCATCATATTGCTGGCGTCGGAAAGATCGACCGTCAATCT
CCGGTCATGATGACCAGAGCCACGGATATCAATTTCAATCCTTATTGGACTGTGCCGGCTTCTATCATCCGCAAGGATCT
GATCCCGCGCATGCAAAAAGATCCGAATTATTTGAGCGATCATAAGATCCGGATCTTCAATAAGGACGGGCAGGAACTGC
AGTCCAGCCAGGTCAATTGGAACTCGCTTGAGGCGACCAACTACCGGTTCCGTCAGGATCCGGGCGGCGACATCAATTCG
CTGGGCGTGGTGCGTATCAATATTGCTAATCCTTACGGCGTCTACATGCATGACACGCCTGAAAAGGGTGTCTTTGGCGA
TGACGAGCGTTTCGTCTCGTCCGGCTGTATTCGCGTGCAGAATGTGCGTGATTATGTCACGTGGCTGCTCAAGGACACGC
CTGGCTGGGATCGTGCGCATATTGATGAGGCGATCCGCTCCGGCCAGCGGATCGACGCGAAGATCACCTCTTCAGTGCCT
GTCTATTGGGTTTATGTCACCGCTTGGGCCACACCCGATGGTTTAGTGCAGTTCCGCGAGGATATTTATCAGCGTGATGG
TTTCGGTGCGGTCGCGGACAATCCGACCACCGTGCAGCAGACGGCCAATGCCCGGAACACGGGGCTCCCGCCGATCAATG
ATGAGGAATGA

Upstream 100 bases:

>100_bases
GTGCTGCATGCCATTTGCTTGGAGCTCTGGGCATGCCCCGTCAATGGAGTCCCGGGAATGAGAATTCCATGAACCGGAGT
TCCATGAATTGGAGTTTAAG

Downstream 100 bases:

>100_bases
GCCACGAGGCTCTTCCTCGACTTTCACGGACTGATTTGAATTTGAATATAATAGAAGGGCGGAAACGAACGTGTTTCCGC
CCTTCTATTATTTTGACGAT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MTNAFFSPARSLLPSLSLAPKIESKRQRNDAKILLAMGLCLSQLPLQVSSALAGPYGSQAEWAQRYDTDANLAVLRSNVP
VLSVQTLNATEQAIETYRNIVARGGWNRVSASATLKLGANNAAVTELRKRLIETGDLDASAGTSPIFDSYVDAGVRHFQA
RHGLAETGIVNRETVTAMNVPADVRLHQLEVNLVRLRSYSGNLGERFVMANIPAMAVETVENGVVATHHIAGVGKIDRQS
PVMMTRATDINFNPYWTVPASIIRKDLIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNWNSLEATNYRFRQDPGGDINS
LGVVRINIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQNVRDYVTWLLKDTPGWDRAHIDEAIRSGQRIDAKITSSVP
VYWVYVTAWATPDGLVQFREDIYQRDGFGAVADNPTTVQQTANARNTGLPPINDEE

Sequences:

>Translated_456_residues
MTNAFFSPARSLLPSLSLAPKIESKRQRNDAKILLAMGLCLSQLPLQVSSALAGPYGSQAEWAQRYDTDANLAVLRSNVP
VLSVQTLNATEQAIETYRNIVARGGWNRVSASATLKLGANNAAVTELRKRLIETGDLDASAGTSPIFDSYVDAGVRHFQA
RHGLAETGIVNRETVTAMNVPADVRLHQLEVNLVRLRSYSGNLGERFVMANIPAMAVETVENGVVATHHIAGVGKIDRQS
PVMMTRATDINFNPYWTVPASIIRKDLIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNWNSLEATNYRFRQDPGGDINS
LGVVRINIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQNVRDYVTWLLKDTPGWDRAHIDEAIRSGQRIDAKITSSVP
VYWVYVTAWATPDGLVQFREDIYQRDGFGAVADNPTTVQQTANARNTGLPPINDEE
>Mature_455_residues
TNAFFSPARSLLPSLSLAPKIESKRQRNDAKILLAMGLCLSQLPLQVSSALAGPYGSQAEWAQRYDTDANLAVLRSNVPV
LSVQTLNATEQAIETYRNIVARGGWNRVSASATLKLGANNAAVTELRKRLIETGDLDASAGTSPIFDSYVDAGVRHFQAR
HGLAETGIVNRETVTAMNVPADVRLHQLEVNLVRLRSYSGNLGERFVMANIPAMAVETVENGVVATHHIAGVGKIDRQSP
VMMTRATDINFNPYWTVPASIIRKDLIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNWNSLEATNYRFRQDPGGDINSL
GVVRINIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQNVRDYVTWLLKDTPGWDRAHIDEAIRSGQRIDAKITSSVPV
YWVYVTAWATPDGLVQFREDIYQRDGFGAVADNPTTVQQTANARNTGLPPINDEE

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=367, Percent_Identity=31.0626702997275, Blast_Score=175, Evalue=6e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 50437; Mature: 50306

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNAFFSPARSLLPSLSLAPKIESKRQRNDAKILLAMGLCLSQLPLQVSSALAGPYGSQA
CCCCCCCHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCH
EWAQRYDTDANLAVLRSNVPVLSVQTLNATEQAIETYRNIVARGGWNRVSASATLKLGAN
HHHHHCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEEECCC
NAAVTELRKRLIETGDLDASAGTSPIFDSYVDAGVRHFQARHGLAETGIVNRETVTAMNV
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECC
PADVRLHQLEVNLVRLRSYSGNLGERFVMANIPAMAVETVENGVVATHHIAGVGKIDRQS
CCCCEEEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHCCEEEEEEECCCCCCCCCC
PVMMTRATDINFNPYWTVPASIIRKDLIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNW
CEEEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCC
NSLEATNYRFRQDPGGDINSLGVVRINIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQ
CCEECCCCEEECCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCEEEE
NVRDYVTWLLKDTPGWDRAHIDEAIRSGQRIDAKITSSVPVYWVYVTAWATPDGLVQFRE
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCEECEEECCCCCEEEEEEEEECCCHHHHHHHH
DIYQRDGFGAVADNPTTVQQTANARNTGLPPINDEE
HHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNAFFSPARSLLPSLSLAPKIESKRQRNDAKILLAMGLCLSQLPLQVSSALAGPYGSQA
CCCCCCHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCH
EWAQRYDTDANLAVLRSNVPVLSVQTLNATEQAIETYRNIVARGGWNRVSASATLKLGAN
HHHHHCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEECCEEEEEECCC
NAAVTELRKRLIETGDLDASAGTSPIFDSYVDAGVRHFQARHGLAETGIVNRETVTAMNV
CHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECC
PADVRLHQLEVNLVRLRSYSGNLGERFVMANIPAMAVETVENGVVATHHIAGVGKIDRQS
CCCCEEEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHCCEEEEEEECCCCCCCCCC
PVMMTRATDINFNPYWTVPASIIRKDLIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNW
CEEEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHCCCCC
NSLEATNYRFRQDPGGDINSLGVVRINIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQ
CCEECCCCEEECCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCEEEE
NVRDYVTWLLKDTPGWDRAHIDEAIRSGQRIDAKITSSVPVYWVYVTAWATPDGLVQFRE
HHHHHHHHHHCCCCCCCHHHHHHHHHCCCEECEEECCCCCEEEEEEEEECCCHHHHHHHH
DIYQRDGFGAVADNPTTVQQTANARNTGLPPINDEE
HHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]