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The map label for this gene is ygiD [H]

Identifier: 182677745

GI number: 182677745

Start: 843402

End: 844190

Strand: Direct

Name: ygiD [H]

Synonym: Bind_0752

Alternate gene names: 182677745

Gene position: 843402-844190 (Clockwise)

Preceding gene: 182677744

Following gene: 182677746

Centisome position: 20.22

GC content: 57.03

Gene sequence:

>789_bases
ATGCCTGTTTTTCCCACGCTTTTTCTTTCGCATGGAGCGCCCGATTTCTCGCTTCATGCGAGCCCCGCAAGAGACTTTCT
CCAGACTTTTGGCGAAAAGCTCGGCAAGCCGCAGGCAATTTTGATCCTGAGCTCGCATTATGACATGGCGCAACCCTCGT
TCAGCGCCGACGAAAAGCCTGGGATGCTCTATGATTTTGAGGGCTATCCCGAAGAAGTCAGCAAGATCGATTATCCGGCT
CCGGGCCTTCCGCAATTGGCGACAATCGCCGCGACCCTGGTCGAACAATCCGGTTTGCCGACGCAGGAAATCATTGGGCG
AGGGTTCGACCAAGGTGCCTGGGGGCCTCTCAGTCTGCTTTATCCGGGCGCTGATATTCCTGTCGTCGAAGCGGCGATTC
AATCGGAAGAAGGTGCTGGGCACCATTTCGTGCTCGGCCGCTGCCTGGCGCCCTTGCGTCAGCATGGGGTTTTGATCATC
GGCTCCGGCCATCTCAACGCCCCGAACGAGGTTTTGGAAAGCAGCGACCCCGCCGCGCCACCGCAGACACCCGACTGGGT
TACGGAATTTGGGGAATGGGTGAGGGAGAAAGCTGAACTGGGAGACTTCGATACGCTCGTCGATTACAAGGCTTTCGCTC
CGCATTCCGCACGCAATCATCCTGAGCCCGATCATTTTATGCCCTTTCCTTTCGCTCTCGGCGCGGCGGGGGAGGGTGCG
AAAGGACGACGCGTGCATCATTCCGTGCAACAGGGCACTTTGCTGATGGATGTTTATCTTTTCGAATAG

Upstream 100 bases:

>100_bases
ATGCGGCCGAATAAAATTTCTCACTCGTCGATCCCAATGGCGTCAAAGCGCGAAAGCTGATTATTCGCGCTTTGACTCCG
TTCAACTTGCGAAATTCGAT

Downstream 100 bases:

>100_bases
GGATCACGACCTATCGTGATCCAGGAGGTCCGGCGGAAAGCCGCCGCCCCGCCGCCGTGGGGCCAGCATGAGAGTGAAAG
AGGTCACCACGTCCTGGGTG

Product: extradiol ring-cleavage dioxygenase class III protein subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPVFPTLFLSHGAPDFSLHASPARDFLQTFGEKLGKPQAILILSSHYDMAQPSFSADEKPGMLYDFEGYPEEVSKIDYPA
PGLPQLATIAATLVEQSGLPTQEIIGRGFDQGAWGPLSLLYPGADIPVVEAAIQSEEGAGHHFVLGRCLAPLRQHGVLII
GSGHLNAPNEVLESSDPAAPPQTPDWVTEFGEWVREKAELGDFDTLVDYKAFAPHSARNHPEPDHFMPFPFALGAAGEGA
KGRRVHHSVQQGTLLMDVYLFE

Sequences:

>Translated_262_residues
MPVFPTLFLSHGAPDFSLHASPARDFLQTFGEKLGKPQAILILSSHYDMAQPSFSADEKPGMLYDFEGYPEEVSKIDYPA
PGLPQLATIAATLVEQSGLPTQEIIGRGFDQGAWGPLSLLYPGADIPVVEAAIQSEEGAGHHFVLGRCLAPLRQHGVLII
GSGHLNAPNEVLESSDPAAPPQTPDWVTEFGEWVREKAELGDFDTLVDYKAFAPHSARNHPEPDHFMPFPFALGAAGEGA
KGRRVHHSVQQGTLLMDVYLFE
>Mature_261_residues
PVFPTLFLSHGAPDFSLHASPARDFLQTFGEKLGKPQAILILSSHYDMAQPSFSADEKPGMLYDFEGYPEEVSKIDYPAP
GLPQLATIAATLVEQSGLPTQEIIGRGFDQGAWGPLSLLYPGADIPVVEAAIQSEEGAGHHFVLGRCLAPLRQHGVLIIG
SGHLNAPNEVLESSDPAAPPQTPDWVTEFGEWVREKAELGDFDTLVDYKAFAPHSARNHPEPDHFMPFPFALGAAGEGAK
GRRVHHSVQQGTLLMDVYLFE

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=235, Percent_Identity=33.6170212765957, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28433; Mature: 28302

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVFPTLFLSHGAPDFSLHASPARDFLQTFGEKLGKPQAILILSSHYDMAQPSFSADEKP
CCCCHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
GMLYDFEGYPEEVSKIDYPAPGLPQLATIAATLVEQSGLPTQEIIGRGFDQGAWGPLSLL
CEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEE
YPGADIPVVEAAIQSEEGAGHHFVLGRCLAPLRQHGVLIIGSGHLNAPNEVLESSDPAAP
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCC
PQTPDWVTEFGEWVREKAELGDFDTLVDYKAFAPHSARNHPEPDHFMPFPFALGAAGEGA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KGRRVHHSVQQGTLLMDVYLFE
CCCHHHHHHHCCEEEEEEEECC
>Mature Secondary Structure 
PVFPTLFLSHGAPDFSLHASPARDFLQTFGEKLGKPQAILILSSHYDMAQPSFSADEKP
CCCHHHHHHCCCCCCEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
GMLYDFEGYPEEVSKIDYPAPGLPQLATIAATLVEQSGLPTQEIIGRGFDQGAWGPLSLL
CEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEE
YPGADIPVVEAAIQSEEGAGHHFVLGRCLAPLRQHGVLIIGSGHLNAPNEVLESSDPAAP
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHCCCCCCC
PQTPDWVTEFGEWVREKAELGDFDTLVDYKAFAPHSARNHPEPDHFMPFPFALGAAGEGA
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KGRRVHHSVQQGTLLMDVYLFE
CCCHHHHHHHCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]