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The map label for this gene is yecS [H]

Identifier: 17548126

GI number: 17548126

Start: 3685534

End: 3686205

Strand: Reverse

Name: yecS [H]

Synonym: RSc3409

Alternate gene names: 17548126

Gene position: 3686205-3685534 (Counterclockwise)

Preceding gene: 17548127

Following gene: 17548125

Centisome position: 99.19

GC content: 67.56

Gene sequence:

>672_bases
ATGAGTGCAGCGGCATTTCTTGAGCACGCGCGGGAGTTCCTGCCGATCCTGCTGCAGGGGGCGGTGGTCACGGTGGAGGT
GACCGTGCTGTCGTTCCTGCTGTCCAGCGTGATCGGGCTGGCGCTGGCGCTGATGCGGCTCTCGCCCATCAAGGCCGTGT
CGGCGGCCGGGGCGACCATCGTCAACATCATCCGCGGGCTGCCGATCATCGTGCAGCTGTTCTACATCTACTTCGTGCTG
CCGGACATCGGCATCCAGCTCACCGCGTTCCAGGCGGGCGTGATCGGGCTGGGCATTGCGTACTCGGCGTACCAGGCGGA
GAACTTCCGCGCGGGCATCGAGGCGGTGGACCCGGGCCAGCGCGAGGCGGCGCAGGCGATGGGCATGCGCGGGGCGCTGA
TCATGCGGCGCGTGATCCTGCCGCAGGCGTTCCGCATCGCGCTGCCGCCGTACGGCAATACGCTGGTGATGATGCTCAAG
GATTCGTCGCTGGTGTCCACCATCACGGTGGCGGAGATGACGCGCGCGGGGCAGCTGATCGCGTCGTCCACGTTCCAGAA
CATGACGGTCTATACGCTGGTGGCGCTGCTGTACCTGCTGATGAGCCTGCCGCTGGTGTTCGGCCTGCGCCGGCTGGAGC
GCCGCATGGGCGCGGGAAGGGGCCAGCGATGA

Upstream 100 bases:

>100_bases
TCGGCCGCATCAACAAGGCCATCGCCAAGATCAAGGCCGACGGCACGCTGGCGGCCATCGTGCAGAAGTGGGGCATCTGA
TCTCGGAGCGGTGAGCAGCC

Downstream 100 bases:

>100_bases
TCGAGATCCGCGAGCTGCAGAAGCACTTTGGCGAGCACCACGTGCTGCGCGGCGTGAGCCTGCGCGTGGACAAGGGCGAG
GTGGTGTGCCTGATCGGCCC

Product: amino-acid transmembrane ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSAAAFLEHAREFLPILLQGAVVTVEVTVLSFLLSSVIGLALALMRLSPIKAVSAAGATIVNIIRGLPIIVQLFYIYFVL
PDIGIQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQREAAQAMGMRGALIMRRVILPQAFRIALPPYGNTLVMMLK
DSSLVSTITVAEMTRAGQLIASSTFQNMTVYTLVALLYLLMSLPLVFGLRRLERRMGAGRGQR

Sequences:

>Translated_223_residues
MSAAAFLEHAREFLPILLQGAVVTVEVTVLSFLLSSVIGLALALMRLSPIKAVSAAGATIVNIIRGLPIIVQLFYIYFVL
PDIGIQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQREAAQAMGMRGALIMRRVILPQAFRIALPPYGNTLVMMLK
DSSLVSTITVAEMTRAGQLIASSTFQNMTVYTLVALLYLLMSLPLVFGLRRLERRMGAGRGQR
>Mature_222_residues
SAAAFLEHAREFLPILLQGAVVTVEVTVLSFLLSSVIGLALALMRLSPIKAVSAAGATIVNIIRGLPIIVQLFYIYFVLP
DIGIQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQREAAQAMGMRGALIMRRVILPQAFRIALPPYGNTLVMMLKD
SSLVSTITVAEMTRAGQLIASSTFQNMTVYTLVALLYLLMSLPLVFGLRRLERRMGAGRGQR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=189, Percent_Identity=44.4444444444444, Blast_Score=160, Evalue=7e-41,
Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=39.0243902439024, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787087, Length=237, Percent_Identity=32.0675105485232, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788645, Length=209, Percent_Identity=33.0143540669856, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=30.4147465437788, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788646, Length=218, Percent_Identity=32.5688073394495, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786874, Length=229, Percent_Identity=27.9475982532751, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=27.3148148148148, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI87082239, Length=188, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994930, Length=188, Percent_Identity=29.7872340425532, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24073; Mature: 23942

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAAFLEHAREFLPILLQGAVVTVEVTVLSFLLSSVIGLALALMRLSPIKAVSAAGATI
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
VNIIRGLPIIVQLFYIYFVLPDIGIQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQ
HHHHCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
REAAQAMGMRGALIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLI
HHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
ASSTFQNMTVYTLVALLYLLMSLPLVFGLRRLERRMGAGRGQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SAAAFLEHAREFLPILLQGAVVTVEVTVLSFLLSSVIGLALALMRLSPIKAVSAAGATI
CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
VNIIRGLPIIVQLFYIYFVLPDIGIQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQ
HHHHCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
REAAQAMGMRGALIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLI
HHHHHHHCCHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
ASSTFQNMTVYTLVALLYLLMSLPLVFGLRRLERRMGAGRGQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]