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The map label for this gene is 17548107

Identifier: 17548107

GI number: 17548107

Start: 3654900

End: 3656030

Strand: Direct

Name: 17548107

Synonym: RSc3390

Alternate gene names: NA

Gene position: 3654900-3656030 (Clockwise)

Preceding gene: 17548105

Following gene: 17548109

Centisome position: 98.34

GC content: 64.37

Gene sequence:

>1131_bases
ATGTCCCGTACCACATTCGCCCTTGCGGCGATCACGGCTGCCGTGGCCGGTCTGGCCGCCACCGGCGCTCAAGCGCAAAC
CTCGGCCGTCACGCTGTATGGCCTGATCGATACCACCATCAGTACGGTCAGCAATACCAACGCCGCGGGCGCCCGTACCA
CCGGCTTCCAGGTGCCCTGGTTCAGCGGCAGCCGCTGGGGCCTGACCGGCAAGGAAGACCTGGGCGGCGGCACGTCGGCC
ATCTTCAAGCTGGAATCCGAATTCGAAACCCCCACCGGCAACATGGACACCCCGGGGGTGCTGTTCAACCGCGATGCCTG
GGTGGGCCTGTCGAATCCCCTCTTCGGCAAGCTGACCTTCGGCCGCCAGAACGCGCTGGCGCGCGACGTCTCCGGCATCT
ACGGCGACCCGTACACCAGCGCCGAGGTGACCCTGGACGAAGGCGGCTACACCAACGTCAACAACTTCAAGCAACTGATC
TTCTACGCAGGCAGCGCCACGGGCACGCGCCTGAACAATGGCGTGGTGTGGAAGAAGCTGTGGGACGGCGGCTTCTTCAC
CGGCCTGGCCTACCAGTTCGGCGAAGTGCCGGGCCAGTTCTCGCAGAACACCACTGAGTCGGCGGCCCTGGGCTACAACG
GCGGCAACTTCCACCTGGCAGCCTTCGCGCAGCAGGCCAAGGTCAACGGATTCACCGACCGCTCGTATTCGCTGGGCGGC
AACGTGATCCTGGGCATGTTCCGCGTCAATGCCGGCTACTACCACTACACCGGCGAGCAGCCGGCCGCGATCGGCAACCG
CAAGGACGACGCCTACACCGTGTCGCTGAAGATCGCTCCGCCGGGTGCCTTCGACTACGAAATCGGCTACCAGATCATGA
AGGCCGGCAATGCCGCGTTCAACGCCGACGGCAACACGCTTAACGCCTACGCCGACGTGTCGACGGCCACCGCTTCCGGC
AGCGGCCGCAAGAACACGCTGTATGGCTCGGTGTTCTATCACGTCTCCAAGCGCACCGAGTTCTATGTGGCGGCCGACTA
CATGAAGCTGAAGGATCAGTACATCGTCGGCTCGACCAACGGCCACAACAGCCAGACCGAGTTCGGCGTCGGCATGCGTA
CCCGCTTCTGA

Upstream 100 bases:

>100_bases
TCTGGCGATCGCATCACGCGGCCTGATCAACCGCCTGATGCGCGTCATTCAAGCCGGCAGGATGACCGGCAACCATTACC
CACAAAAGAAGGAGACTGCG

Downstream 100 bases:

>100_bases
TCAGGGCAGTTTCGCCTGATCGACGAAGCGGTTGGTGTACGTCCGCGACAGGTCGATGTGCTTGTCGCGGGCGTTCGGGT
TGCTGGTCGATAGCACGCGC

Product: porin signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSRTTFALAAITAAVAGLAATGAQAQTSAVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGGTSA
IFKLESEFETPTGNMDTPGVLFNRDAWVGLSNPLFGKLTFGRQNALARDVSGIYGDPYTSAEVTLDEGGYTNVNNFKQLI
FYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEVPGQFSQNTTESAALGYNGGNFHLAAFAQQAKVNGFTDRSYSLGG
NVILGMFRVNAGYYHYTGEQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFNADGNTLNAYADVSTATASG
SGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFGVGMRTRF

Sequences:

>Translated_376_residues
MSRTTFALAAITAAVAGLAATGAQAQTSAVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGGTSA
IFKLESEFETPTGNMDTPGVLFNRDAWVGLSNPLFGKLTFGRQNALARDVSGIYGDPYTSAEVTLDEGGYTNVNNFKQLI
FYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEVPGQFSQNTTESAALGYNGGNFHLAAFAQQAKVNGFTDRSYSLGG
NVILGMFRVNAGYYHYTGEQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFNADGNTLNAYADVSTATASG
SGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFGVGMRTRF
>Mature_375_residues
SRTTFALAAITAAVAGLAATGAQAQTSAVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGGTSAI
FKLESEFETPTGNMDTPGVLFNRDAWVGLSNPLFGKLTFGRQNALARDVSGIYGDPYTSAEVTLDEGGYTNVNNFKQLIF
YAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEVPGQFSQNTTESAALGYNGGNFHLAAFAQQAKVNGFTDRSYSLGGN
VILGMFRVNAGYYHYTGEQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFNADGNTLNAYADVSTATASGS
GRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFGVGMRTRF

Specific function: Forms anion selective channels [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 40095; Mature: 39964

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTTFALAAITAAVAGLAATGAQAQTSAVTLYGLIDTTISTVSNTNAAGARTTGFQVPW
CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCEECCC
FSGSRWGLTGKEDLGGGTSAIFKLESEFETPTGNMDTPGVLFNRDAWVGLSNPLFGKLTF
CCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCEEEECCCCCEEEEEC
GRQNALARDVSGIYGDPYTSAEVTLDEGGYTNVNNFKQLIFYAGSATGTRLNNGVVWKKL
CCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHEEEEEEECCCCCCCCCCCEEEEEE
WDGGFFTGLAYQFGEVPGQFSQNTTESAALGYNGGNFHLAAFAQQAKVNGFTDRSYSLGG
CCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEEHHHHCCCCCCCCEECCC
NVILGMFRVNAGYYHYTGEQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAF
CEEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHCCEEEECCCEEE
NADGNTLNAYADVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTN
CCCCCEEEEEEECEEEECCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCEEEEECCC
GHNSQTEFGVGMRTRF
CCCCCCEECCCEECCC
>Mature Secondary Structure 
SRTTFALAAITAAVAGLAATGAQAQTSAVTLYGLIDTTISTVSNTNAAGARTTGFQVPW
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCCEECCC
FSGSRWGLTGKEDLGGGTSAIFKLESEFETPTGNMDTPGVLFNRDAWVGLSNPLFGKLTF
CCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCEEEECCCCCEEEEEC
GRQNALARDVSGIYGDPYTSAEVTLDEGGYTNVNNFKQLIFYAGSATGTRLNNGVVWKKL
CCCHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHEEEEEEECCCCCCCCCCCEEEEEE
WDGGFFTGLAYQFGEVPGQFSQNTTESAALGYNGGNFHLAAFAQQAKVNGFTDRSYSLGG
CCCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEEHHHHCCCCCCCCEECCC
NVILGMFRVNAGYYHYTGEQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAF
CEEEEEEEECCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHCCEEEECCCEEE
NADGNTLNAYADVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTN
CCCCCEEEEEEECEEEECCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCEEEEECCC
GHNSQTEFGVGMRTRF
CCCCCCEECCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]